YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS3
Organism:	Homo sapiens
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS3.

Description	E-value	Query Range	Subject Range
RS3_PONAB - 40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1 gi\|62897657 - gi\|62897657\|dbj\|BAD96768.1\| ribosomal protein S3 variant [Homo sapiens] RS3_PONPY - 40S ribosomal protein S3 - Pongo pygmaeus (Orangutan)	8.0E-78	[1..243]	[1..243]
gi\|70850 - gi\|70850\|pir\|\|R3RT3 ribosomal protein S3, cytosolic [validated] - rat	9.0E-78	[1..243]	[1..243]
ENSOCUP00000018598 - pep:novel chromosome:oryCun2:1:141307967:141313167:-1 gene:ENSOCUG00000022412 transcript:ENSOCUT0000... gi\|57728 - gi\|57728\|emb\|CAA35916.1\| unnamed protein product [Rattus rattus] gi\|55715858 - gb\|AAH86122.1\| Unknown (protein for MGC:98523) [Xenopus laevis] RS3_MOUSE - 40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1 RS3_CANLF - 40S ribosomal protein S3 OS=Canis lupus familiaris GN=RPS3 PE=1 SV=1 gi\|149719291 - gi\|149719291\|ref\|XP_001494894.1\| PREDICTED: similar to 40S ribosomal protein S3 [Equus caballus] RS3_RAT - 40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=1 SV=1 tr\|M3WG22\|M3WG22... - Uncharacterized protein OS=Felis catus GN=RPS3 PE=3 SV=1	1.0E-77	[1..243]	[1..243]
gi\|60652571 - gi\|60652571\|gb\|AAX28980.1\| ribosomal protein S3 [synthetic construct]	2.0E-77	[1..243]	[1..243]
gi\|7765076 - gi\|7765076\|gb\|AAB19349.2\| S3 ribosomal protein [Homo sapiens]	2.0E-77	[1..243]	[1..243]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVQISKKRK FVADGIFKAE LNEFLTRELA EDGYSGVEVR VTPTRTEIII LATRTQNVLG  60
   61 EKGRRIRELT AVVQKRFGFP EGSVELYAEK VATRGLCAIA QAESLRYKLL GGLAVRRACY 120
  121 GVLRFIMESG AKGCEVVVSG KLRGQRAKSM KFVDGLMIHS GDPVNYYVDT AVRHVLLRQG 180
  181 VLGIKVKIML PWDPTGKIGP KKPLPDHVSI VEPKDEILPT TPISEQKGGK PEPPAMPQPV 240
  241 PTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.221849
Match:	1s1hC
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits