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View Structure Prediction Details

Protein: RTN3
Organism: Homo sapiens
Length: 236 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTN3.

Description E-value Query
Range
Subject
Range
gi|49333549, gi|... - gi|72535156|ref|NP_001025138.2| reticulon 1a isoform 1 [Danio rerio], gi|49333549|gb|AAT64113.1| ret...
6.0E-71 [5..234] [589..818]
gi|40788974 - gi|40788974|dbj|BAA74909.2| KIAA0886 protein [Homo sapiens]
2.0E-70 [17..236] [1015..1233]
gi|109103031 - gi|109103031|ref|XP_001112090.1| PREDICTED: reticulon 4 [Macaca mulatta]
3.0E-70 [18..236] [1119..1336]
RTN4_RAT - Reticulon-4 OS=Rattus norvegicus GN=Rtn4 PE=1 SV=1
3.0E-70 [2..233] [929..1161]
gi|56791762, gi|... - gi|56961618|ref|NP_989697.2| reticulon 4 [Gallus gallus], gi|56791762|gb|AAW30397.1| NOGO isoform A2...
1.0E-69 [4..233] [832..1063]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPSAATQS HSISSSSFGA EPSAPGGGGS PGACPALGTK SCSSSCAVHD LIFWRDVKKT  60
   61 GFVFGTTLIM LLSLAA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSVISVVSYL ILALLSVTIS FRIYKSVIQA VQKSEEGHPF KAYLDVDITL SSEAFHNYMN  60
   61 AAMVHINRAL KLIIRLFLVE DLVDSLKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.69897
Match: 2g31A
Description: No description for 2g31A was found.

Predicted Domain #3
Region A:
Residues: [165-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVFMWLMTYV GAVFNGITLL ILAELLIFSV PIVYEKYKTQ IDHYVGIARD QTKSIVEKIQ  60
   61 AKLPGIAKKK AE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle