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View Structure Prediction Details

Protein: MTERF
Organism: Homo sapiens
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTERF.

Description E-value Query
Range
Subject
Range
gi|123994931 - gi|123994931|gb|ABM85067.1| mitochondrial transcription termination factor [synthetic construct]
gi|12654289 - gi|12654289|gb|AAH00965.1| Mitochondrial transcription termination factor, precursor [Homo sapiens]
358.0 [0..1] [399..1]
gi|114614414, gi... - gi|114614418|ref|XP_001165566.1| PREDICTED: mitochondrial transcription termination factor isoform 2...
355.0 [0..1] [399..1]
MTERF_PONPY - Transcription termination factor, mitochondrial precursor - Pongo pygmaeus (Orangutan)
MTEF1_PONAB - Transcription termination factor 1, mitochondrial OS=Pongo abelii GN=MTERF1 PE=2 SV=1
345.0 [0..1] [399..1]
gi|109067551 - gi|109067551|ref|XP_001092039.1| PREDICTED: mitochondrial transcription termination factor [Macaca m...
345.0 [0..1] [399..89]
MTEF1_RAT - Transcription termination factor 1, mitochondrial OS=Rattus norvegicus GN=Mterf1 PE=1 SV=1
316.0 [0..21] [396..1]
MTF1B_MOUSE - Transcription termination factor 1b, mitochondrial OS=Mus musculus GN=Mterf1b PE=2 SV=1
314.0 [0..21] [395..1]
gi|115305154 - gi|115305154|gb|AAI23559.1| MTERF protein [Bos taurus]
303.0 [0..5] [395..41]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSLSLGQTS ISKGLNYLTI MAPGNLWHMR NNFLFGSRCW MTRFSAENIF KSVSFRLFGV  60
   61 KCHNTDSEPL KNEDLLKNLL TMGVDIDMAR KRQPGVFHRM IT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.614 a.74.1 Cyclin-like
View Download 0.601 a.74.1 Cyclin-like
View Download 0.594 d.15.6 Superantigen toxins, C-terminal domain
View Download 0.583 a.74.1 Cyclin-like
View Download 0.550 a.74.1 Cyclin-like
View Download 0.533 c.46.1 Rhodanese/Cell cycle control phosphatase
View Download 0.502 c.55.6 DNA repair protein MutS, domain II
View Download 0.501 d.68.4 YhbY-like
View Download 0.494 c.30.1 PreATP-grasp domain
View Download 0.471 c.30.1 PreATP-grasp domain

Predicted Domain #2
Region A:
Residues: [103-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEQDLKMFLL SKGASKEVIA SIISRYPRAI TRTPENLSKR WDLWRKIVTS DLEIVNILER  60
   61 SPESFFRSNN NLNLENNIKF LYSVGLTRKC LCRLLTNAPR TFSNSLDLNK QMVEFLQAAG 120
  121 LSLGHNDPAD FVRKIIFKNP FILI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.535 N/A N/A c.23.6 Cobalamin (vitamin B12)-binding domain
View Download 0.528 N/A N/A c.23.6 Cobalamin (vitamin B12)-binding domain
View Download 0.427 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.378 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.373 N/A N/A a.60.8 HRDC-like
View Download 0.350 N/A N/A c.23.1 CheY-like
View Download 0.340 N/A N/A c.23.1 CheY-like
View Download 0.330 N/A N/A d.92.1 Metalloproteases ("zincins"), catalytic domain
View Download 0.309 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.300 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains

Predicted Domain #3
Region A:
Residues: [247-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSTKRVKANI EFLRSTFNLN SEELLVLICG PGAEILDLSN DYARRSYANI KEKLFSLGCT  60
   61 EEEVQKFVLS YPDVIFLAEK KFNDKIDCLM EENISISQII ENPRVLDSSI STLKSRIKEL 120
  121 VNAGCNLSTL NITLLSWSKK RYEAKLKKLS RFA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle