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View Structure Prediction Details

Protein: ARFGAP1
Organism: Homo sapiens
Length: 406 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARFGAP1.

Description E-value Query
Range
Subject
Range
gi|62898415 - gi|62898415|dbj|BAD97147.1| ADP-ribosylation factor GTPase activating protein 1 isoform a variant [H...
0.0 [1..406] [1..406]
gi|114683029, gi... - gi|114683029|ref|XP_001148867.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes], gi|114...
0.0 [1..406] [1..406]
gi|109091352 - gi|109091352|ref|XP_001114362.1| PREDICTED: similar to ADP-ribosylation factor GTPase activating pro...
0.0 [1..406] [1..414]
ARFG1_MOUSE - ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2
0.0 [1..406] [1..414]
ARFG1_RAT - ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1
0.0 [1..406] [1..415]

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Predicted Domain #1
Region A:
Residues: [1-123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPRTRKVL KEVRVQDENN VCFECGAFNP QWVSVTYGIW ICLECSGRHR GLGVHLSFVR  60
   61 SVTMDKWKDI ELEKMKAGGN AKFREFLESQ EDYDPCWSLQ EKYNSRAAAL FRDKVVALAE 120
  121 GRE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.69897
Match: 2iqjA
Description: No description for 2iqjA was found.

Predicted Domain #2
Region A:
Residues: [124-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSLESSPAQN WTPPQPRTLP SMVHRVSGQP QSVTASSDKA FEDWLNDDLG SYQGAQGNRY  60
   61 VGFGNTPPPQ KKEDDFLNNA MSSLYSGWSS FTTGASRFAS AAKEGATKFG SQASQKASEL 120
  121 GHSLNENVLK PAQEKVKEGK IFDDVSSGVS QLASKVQGVG SKGWRDVTTF FSGKA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [299-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGPLDSPSEG HSYQNSGLDH FQNSNIDQSF WETFGSAEPT KTRKSPSSDS WTCADTSTER  60
   61 RSSDSWEVWG SASTNRNSNS DGGEGGEGTK KAVPPAVPTD DGWDNQNW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle