YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL36
Organism:	Homo sapiens
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL36.

Description	E-value	Query Range	Subject Range
gi\|6166338 - gi\|6166338\|gb\|AAF04788.1\|AF151109_1 putative BRCA1-interacting protein [Homo sapiens]	4.0E-34	[1..103]	[18..120]
gi\|114577938 - gi\|114577938\|ref\|XP_517616.2\| PREDICTED: similar to putative BRCA1-interacting protein [Pan troglody...	4.0E-33	[1..103]	[32..134]
RM36_MOUSE - 39S ribosomal protein L36, mitochondrial OS=Mus musculus GN=Mrpl36 PE=3 SV=1	1.0E-26	[1..103]	[1..102]
RM36_RAT - 39S ribosomal protein L36, mitochondrial OS=Rattus norvegicus GN=Mrpl36 PE=3 SV=1	2.0E-26	[1..103]	[1..97]
gi\|45198462, gi\|... - gi\|45198462\|ref\|NP_985491.1\| AFL057Wp [Ashbya gossypii ATCC 10895], gi\|44984413\|gb\|AAS53315.1\| AFL05... gi\|44984413 - gi\|44984413\|gb\|AAS53315.1\| AFL057Wp [Ashbya gossypii ATCC 10895]	2.0E-17	[25..102]	[1..79]
gi\|220959306, gi... - gi\|220959306\|gb\|ACL92196.1\| mRpL36-PA [synthetic construct], gi\|220950322\|gb\|ACL87704.1\| mRpL36-PA [... mRpL36-PA - The gene mitochondrial ribosomal protein L36 is referred to in FlyBase by the symbol Dmel\mRpL36 (CG...	4.0E-17	[33..103]	[37..107]
gi\|58387994, gi\|... - gi\|58387994\|ref\|XP_315957.2\| ENSANGP00000014147 [Anopheles gambiae str. PEST], gi\|55238739\|gb\|EAA116...	4.0E-17	[27..103]	[20..102]
gi\|76673281 - gi\|76673281\|ref\|XP_580819.2\| PREDICTED: similar to rCG41937 [Bos taurus]	4.0E-17	[1..103]	[49..148]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLFIRKMV NPLLYLSRHT VKPRALSTFL FGSIRGAAPV AVEPGAAVRS LLSPGLLPHL  60
   61 LPALGFKNKT VLKKRCKDCY LVKRRGRWYV YCKTHPRHKQ RQM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits