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View Structure Prediction Details

Protein: GATAD2B
Organism: Homo sapiens
Length: 593 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GATAD2B.

Description E-value Query
Range
Subject
Range
gi|67846054, gi|... - gi|67846054|ref|NP_001020059.1| GATA zinc finger domain containing 2B [Rattus norvegicus], gi|669106...
0.0 [1..593] [1..593]
gi|114559807 - gi|114559807|ref|XP_001144374.1| PREDICTED: GATA zinc finger domain containing 2B [Pan troglodytes]
0.0 [1..593] [1..593]
gi|109016427 - gi|109016427|ref|XP_001111874.1| PREDICTED: similar to GATA zinc finger domain containing 2B isoform...
0.0 [1..593] [1..593]
P66B_MOUSE - Transcriptional repressor p66-beta OS=Mus musculus GN=Gatad2b PE=1 SV=1
0.0 [1..593] [1..594]
gi|76612152 - gi|76612152|ref|XP_581262.2| PREDICTED: similar to GATA zinc finger domain containing 2B [Bos taurus...
0.0 [1..593] [1..592]
gi|57089631 - gi|57089631|ref|XP_547575.1| PREDICTED: similar to GATA zinc finger domain containing 2B isoform 1 [...
0.0 [1..593] [1..593]
gi|6330051 - gi|6330051|dbj|BAA86464.1| KIAA1150 protein [Homo sapiens]
6.0E-82 [95..593] [1..499]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRMTEDALR LNLLKRSLDP ADERDDVLAK RLKMEGHEAM ERLKMLALLK RKDLANLEVP  60
   61 HELPTKQDGS GVKGYEEKLN GNLRPHGDNR TAGRPGKENI NDEPVDMSAR RSEPERGRLT 120
  121 PSPDIIVLSD NEASSPRSSS RMEERLKAA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [150-367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLEMFKGKGI EERQQLIKQL RDELRLEEAR LVLLKKLRQS QLQKENVVQK TPVVQNAASI  60
   61 VQPSPAHVGQ QGLSKLPSRP GAQGVEPQNL RTLQGHSVIR SATNTTLPHM LMSQRVIAPN 120
  121 PAQLQGQRGP PKPGLVRTTT PNMNPAINYQ PQSSSSVPCQ RTTSSAIYMN LASHIQPGTV 180
  181 NRVSSPLPSP SAMTDAANSQ AAAKLALRKQ LEKTLLEI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [368-436]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPKPPAPLL HFLPSAANSE FIYMVGLEEV VQSVIDSQGK SCASLLRVEP FVCAQCRTDF  60
   61 TPHWKQEKN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [437-593]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKILCEQCMT SNQKKALKAE HTNRLKNAFV KALQQEQEIE QRLQQQAALS PTTAPAVSSV  60
   61 SKQETIMRHH TLRQAPQPQS SLQRGIPTSA RSMLSNFAQA PQLSVPGGLL GMPGVNIAYL 120
  121 NTGIGGHKGP SLADRQREYL LDMIPPRSIS QSISGQK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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