YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18676522
Organism:	Homo sapiens
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18676522.

Description	E-value	Query Range	Subject Range
gi\|17939650, gi\|... - gi\|5578958\|emb\|CAB51351.1\| LAS1-like (S. cerevisiae) [Homo sapiens], gi\|17939650\|gb\|AAH19302.1\| LAS1...	0.0	[18..299]	[1..282]
gi\|94408000 - gi\|94408000\|ref\|XP_909819.2\| PREDICTED: similar to LAS1-like isoform 1 isoform 2 [Mus musculus]	0.0	[33..298]	[1..265]
gi\|74007520 - gi\|74007520\|ref\|XP_538062.2\| PREDICTED: similar to LAS1-like [Canis familiaris]	0.0	[4..298]	[18..312]
gi\|109510859, gi... - gi\|109512022\|ref\|XP_001067427.1\| PREDICTED: similar to LAS1-like isoform 1 [Rattus norvegicus], gi\|1...	0.0	[33..298]	[1..265]
gi\|42761494, gi\|... - gi\|60473294\|gb\|EAL71240.1\| hypothetical protein DDB0168741 [Dictyostelium discoideum], gi\|42761494\|g... gi\|66823745, gi\|... - gi\|66823745\|ref\|XP_645227.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60473294\|gb\|EAL...	8.0E-61	[51..249]	[2..196]
gi\|42554116, gi\|... - gi\|46125539\|ref\|XP_387323.1\| hypothetical protein FG07147.1 [Gibberella zeae PH-1], gi\|42554116\|gb\|E...	2.0E-58	[58..238]	[5..220]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEGCAERRGT EPVVELSMSW ESGAGPGLGS QGMDLVWSAW YGKCVKGKGS LPLSAHGIVV  60
   61 AWLSRAEWDQ VTVYLFCDDH KLQRYALNRI TVWRSRSGNE LPLAVASTAD LIRCKLLDVT 120
  121 GGLGTDELRL LYGMALVRFV NLISERKTKF AKVPLKCLAQ EVNIPDWIVD LRHELTHKKM 180
  181 PHINDCRRGC YFVLDWLQKT YWCRQLENSL RETWELEEF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	72.886057
Match:	PF04031.4
Description:	No description for PF04031.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [220-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REGIEEEDQE EDKNIVVDDI TEQKPEPQDD GKSTESDVKA DGDSKGSEEV DSHCKKALSH  60
   61 KELYERAREL LVSYEEEQFT GGCAGCFSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits