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View Structure Prediction Details

Protein: gi|13129138, gi|...
Organism: Homo sapiens
Length: 486 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13129138, gi|....

Description E-value Query
Range
Subject
Range
gi|48762794 - gi|48762794|gb|AAT46478.1| mitogen-activated protein kinase 2-associated protein 1a [Homo sapiens]
826.0 [0..1] [486..1]
gi|73968045 - gi|73968045|ref|XP_863189.1| PREDICTED: similar to mitogen-activated protein kinase associated prote...
822.0 [0..1] [486..1]
SIN1_RAT - Target of rapamycin complex 2 subunit MAPKAP1 OS=Rattus norvegicus GN=Mapkap1 PE=2 SV=1
807.0 [0..1] [486..1]
gi|55726571 - gi|55726571|emb|CAH90052.1| hypothetical protein [Pongo abelii]
SIN1_PONAB - Target of rapamycin complex 2 subunit MAPKAP1 OS=Pongo abelii GN=MAPKAP1 PE=2 SV=1
807.0 [0..1] [486..1]
SIN1_MOUSE - Target of rapamycin complex 2 subunit MAPKAP1 OS=Mus musculus GN=Mapkap1 PE=1 SV=1
806.0 [0..1] [486..1]
SIN1_SHEEP - Target of rapamycin complex 2 subunit MAPKAP1 OS=Ovis aries GN=MAPKAP1 PE=1 SV=1
798.0 [0..1] [486..1]

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Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLDNPTII LAHIRQSHVT SDDTGMCEMV LIDHDVDLEK IHPPSMPGDS GSEIQGSNGE  60
   61 TQGYVYAQSV DITSSWDFGI RRRSNTAQRL ERLRKERQNQ IKCKNIQWKE RNSKQSAQEL 120
  121 KSLFEKKSLK EKPPISGKQS ILSVRLEQCP LQLNNPFNEY SKFDGKGHVG TTATKKIDVY 180
  181 LPLHSSQDRL LPMTVVTMAS ARVQDLIGLI CWQYTSEG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [219-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REPKLNDNVS AYCLHIAEDD GEVDTDFPPL DSNEPIHKFG FSTLALVEKY SSPGLTSKES  60
   61 LFVRINAAHG FSLIQVDNTK VTMKEILLKA VKRRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.613 N/A N/A d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain
View Download 0.522 N/A N/A b.3.2 Carboxypeptidase D, a regulatory domain
View Download 0.518 N/A N/A d.51.1 Eukaryotic type KH-domain (KH-domain type I)
View Download 0.515 N/A N/A d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain
View Download 0.480 N/A N/A d.24.1 Pili subunits
View Download 0.439 N/A N/A d.129.1 TATA-box binding protein-like
View Download 0.424 N/A N/A d.129.1 TATA-box binding protein-like
View Download 0.421 N/A N/A d.129.1 TATA-box binding protein-like
View Download 0.397 N/A N/A d.50.1 dsRNA-binding domain-like
View Download 0.390 N/A N/A d.15.7 Immunoglobulin-binding domains

Predicted Domain #3
Region A:
Residues: [314-486]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSQKVSGSRA DGVFEEDSQI DIATVQDMLS SHHYKSFKVS MIHRLRFTTD VQLGISGDKV  60
   61 EIDPVTNQKA STKFWIKQKP ISIDSDLLCA CDLAEEKSPS HAIFKLTYLS NHDYKHLYFE 120
  121 SDAATVNEIV LKVNYILESR ASTARADYFA QKQRKLNRRT SFSFQKEKKS GQQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle