YRC Public Data Repository - Protein Structure Prediction

Protein:	IGLC3, IGLC1, IGLC2
Organism:	Homo sapiens
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IGLC3, IGLC1, IGLC2.

Description	E-value	Query Range	Subject Range
gi\|47077339 - gi\|47077339\|dbj\|BAD18844.1\| MHC class I antigen [Aotus trivirgatus]	148.0	[0..1]	[105..201]
gi\|49175343 - gi\|49175343\|gb\|AAT52041.1\| MHC class I antigen [Macaca nemestrina]	147.0	[0..1]	[105..201]
gi\|56112035 - gi\|56112035\|gb\|AAV71051.1\| MHC class I antigen [Aotus nancymaae]	146.0	[0..1]	[105..196]
gi\|54109967 - gi\|54109967\|emb\|CAH60726.1\| MHC class I antigen [Macaca mulatta]	146.0	[0..1]	[105..193]
gi\|21693020 - gi\|21693020\|emb\|CAD20188.1\| MHC class I antigen [Homo sapiens]	146.0	[0..1]	[105..204]
gi\|48958327 - gi\|48958327\|dbj\|BAD23906.1\| MHC class I heavy chain antigen [Macaca fascicularis]	146.0	[0..1]	[105..204]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPKAAPSVTL FPPSSEELQA NKATLVCLIS DFYPGAVTVA WKADSSPVKA GVETTTPSKQ  60
   61 SNNKYAASSY LSLTPEQWKS HRSYSCQVTH EGSTVEKTVA PTECS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	7fabL
Description:	Immunoglobulin light chain lambda variable domain, VL-lambda; Immunoglobulin light chain lambda constant domain, CL-lambda
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits