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View Structure Prediction Details

Protein: DEP1
Organism: Saccharomyces cerevisiae
Length: 420 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEP1.

Description E-value Query
Range
Subject
Range
MDN1 - Huge dynein-related AAA-type ATPase (midasin), forms extended pre-60S particle with the Rix1 complex...
MDN1_YEAST - Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDN1 PE=1 SV=1
185.0 [0..2] [369..4184]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQTPQESE QTTAKEQDLD QESVLSNIDF NTDLNHNLNL SEYCISSDAG TEKMDSDEEK  60
   61 SLANLPELKY APKLSSLVKQ ETLTESLKRP HEDEKEAIDE AKKMKVPGEN EDESKEEEKS 120
  121 QELEEAIDSK EKSTDARDEQ GDEGDNEEEN NEEDNENENE HTAPPALVMP SPIEMEEQRM 180
  181 TAL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [184-420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEITDIEYKF AQLRQKLYDN QLVRLQTELQ MCLEGSHPEL QVYYSKIAAI RDYKLHRAYQ  60
   61 RQKYELSCIN TETIATRTFI HQDFHKKVTD LRARLLNRTT QTWYDINKER RDMDIVIPDV 120
  121 NYHVPIKLDN KTLSCITGYA SAAQLCYPGE PVAEDLACES IEYRYRANPV DKLEVIVDRM 180
  181 RLNNEISDLE GLRKYFHSFP GAPELNPLRD SEINDDFHQW AQCDRHTGPH TTSFCYS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.955 a.87.1 DBL homology domain (DH-domain)


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle