YRC Public Data Repository - Protein Structure Prediction

Protein:	SEN15
Organism:	Saccharomyces cerevisiae
Length:	128 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEN15.

Description	E-value	Query Range	Subject Range
SEN15 - Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p gi\|151946217 - gi\|151946217\|gb\|EDN64448.1\| tRNA splicing endonuclease subunit [Saccharomyces cerevisiae YJM789]	191.0	[0..1]	[128..21]
gi\|49525554, gi\|... - gi\|50287635\|ref\|XP_446247.1\| unnamed protein product [Candida glabrata], gi\|49525554\|emb\|CAG59171.1\|... gi\|49525554 - gi\|49525554\|emb\|CAG59171.1\| unnamed protein product [Candida glabrata]	177.0	[0..3]	[128..1]
gi\|49657756, gi\|... - gi\|50426967\|ref\|XP_462086.1\| hypothetical protein DEHA0G13497g [Debaryomyces hansenii CBS767], gi\|49...	154.0	[0..5]	[128..2]
gi\|49093486, gi\|... - gi\|67527378\|ref\|XP_661671.1\| hypothetical protein AN4067.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	150.0	[0..3]	[128..28]
SEN15_NEUCR, SE1... - Probable tRNA-splicing endonuclease subunit sen-15 OS=Neurospora crassa GN=sen-15 PE=3 SV=1, (Q7RY78... SEN15_NEUCR - Probable tRNA-splicing endonuclease subunit tsp-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-...	149.0	[0..3]	[128..75]
SEN15_ASHGO, SE1... - tRNA-splicing endonuclease subunit SEN15 OS=Ashbya gossypii GN=SEN15 PE=3 SV=1, (Q759Y8) tRNA-splici... SEN15_ASHGO - tRNA-splicing endonuclease subunit SEN15 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9...	149.0	[0..3]	[128..9]
gi\|116207406, gi... - gi\|88183593\|gb\|EAQ91061.1\| hypothetical protein CHGG_02996 [Chaetomium globosum CBS 148.51], gi\|1162...	147.0	[0..3]	[128..7]
gi\|145016271, gi... - gi\|39976855\|ref\|XP_369815.1\| hypothetical protein MGG_06330 [Magnaporthe grisea 70-15], gb\|EAA56359....	146.0	[0..2]	[128..10]
gi\|90303273, gi\|... - gi\|90303273\|gb\|EAS32904.1\| hypothetical protein CIMG_03928 [Coccidioides immitis RS], gi\|119187761\|r...	146.0	[0..5]	[128..28]
gi\|169596957, gi... - gi\|169596957\|ref\|XP_001791902.1\| hypothetical protein SNOG_01255 [Phaeosphaeria nodorum SN15], gi\|11...	146.0	[0..3]	[128..33]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTDIISLV KNNLLYFQMW TEVEILQDDL SWKGNSLRLL RGRPPHKLSN DVDTEHENSL  60
   61 SSPRPLEFIL PINMSQYKEN FLTLECLSQT FTHLCSPSTE RILLAIINDD GTIVYYFVYK 120
  121 GVRKPKRN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.9
Match:	2gw6A
Description:	No description for 2gw6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits