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View Structure Prediction Details

Protein: PBA1
Organism: Saccharomyces cerevisiae
Length: 276 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBA1.

Description E-value Query
Range
Subject
Range
gi|207342969 - gi|207342969|gb|EDZ70576.1| YLR199Cp-like protein [Saccharomyces cerevisiae AWRI1631]
PBA1 - Protein involved in 20S proteasome assembly; forms a heterodimer with Add66p that binds to proteasom...
420.0 [0..57] [276..1]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFKQWNDLP EPKHLLDLPE ISKNLQSLEV CPVPKVEFPQ DLDVPQYSTA VITTKIMNPL  60
   61 FPKNLLQLTS IGEIKTTLTV KSPSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQSSGKHSWN YDENFPNEVD PDQKNDTADE TVYGFSFPIY SFGKTLLFSM EENFISISPI  60
   61 FGNMISRSII SQLAQFSPDI IVIGTSDKIA SMKVMTENEC TLQPPEFITG FIGSVLTQLI 120
  121 VGPSKGLKFK CLVAPSEGPN GFEKLSLSDM GSLVDLCGQW LGFEPSRYSE ECYRLWRCDS 180
  181 AAIGAQSGLY I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle