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View Structure Prediction Details

Protein: MRPL13
Organism: Saccharomyces cerevisiae
Length: 264 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL13.

Description E-value Query
Range
Subject
Range
MRPL13 - Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation
gi|207343433 - gi|207343433|gb|EDZ70893.1| YKR006Cp-like protein [Saccharomyces cerevisiae AWRI1631]
461.0 [0..1] [264..12]
gi|44983213 - gi|44983213|gb|AAS52395.1| AEL289Wp [Ashbya gossypii ATCC 10895]
gi|44983213, gi|... - gi|45190317|ref|NP_984571.1| AEL289Wp [Ashbya gossypii ATCC 10895], gi|44983213|gb|AAS52395.1| AEL28...
349.0 [0..28] [263..13]
gi|49640258 - gi|49640258|emb|CAH02715.1| KLLA0A02915p [Kluyveromyces lactis]
gi|49640258, gi|... - gi|50302385|ref|XP_451127.1| unnamed protein product [Kluyveromyces lactis], gi|49640258|emb|CAH0271...
195.0 [0..25] [262..12]
gi|49528180, gi|... - gi|50292869|ref|XP_448867.1| unnamed protein product [Candida glabrata], gi|49528180|emb|CAG61837.1|...
gi|49528180 - gi|49528180|emb|CAG61837.1| unnamed protein product [Candida glabrata]
178.0 [0..21] [264..4]
gi|49648999 - gi|49648999|emb|CAG81329.1| YALI0D21934p [Yarrowia lipolytica]
gi|49648999, gi|... - gi|50551315|ref|XP_503131.1| YALI0D21934p [Yarrowia lipolytica], gi|49648999|emb|CAG81329.1| unnamed...
65.0 [0..24] [259..22]

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Predicted Domain #1
Region A:
Residues: [1-123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLLKLHCI RPLPQRSVWL SGYKQKARCI HSSAANGDFM SWFKRKKQEE HQEPVKDTKQ  60
   61 LIKDIEEGTN EASSQSSSNN KNRLELIPEN FIGEGSRRCK RQKELKLAVS SAPFNQWLSR 120
  121 DKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [124-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSDNQLDDMI LQATEKTLGK VDQDVQFSDL VAKFQFTKFL QSKSGYLIPD YELTTLSTPL  60
   61 QFKRYIKEKI LPSANDPKLA YKEAEPNAIH PFSDNYASPN IYVVNDVTSK EQKSKYDTIM 120
  121 KEIQKLEDDA TRKALETARS A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle