YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL49
Organism:	Saccharomyces cerevisiae
Length:	161 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL49.

Description	E-value	Query Range	Subject Range
gi\|5712722 - gi\|5712722\|gb\|AAD47625.1\| unknown [Pseudomonas sp. BG33R]	9.0E-39	[12..159]	[64..203]
MRPL49 - Mitochondrial ribosomal protein of the large subunit RN49_YEAST - 54S ribosomal protein L49, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|190409405 - gi\|190409405\|gb\|EDV12670.1\| 60S ribosomal protein L49, mitochondrial precursor [Saccharomyces cerevi...	5.0E-35	[1..161]	[1..161]
gi\|26987424, gi\|... - gi\|26987424\|ref\|NP_742849.1\| 50S ribosomal protein L21 [Pseudomonas putida KT2440], gi\|24982083\|gb\|A...	9.0E-33	[12..159]	[30..169]
gi\|25525493 - pir\|\|AD3277 LSU ribosomal protein L21P [imported] - Brucella melitensis (strain 16M) gi\|17982086, gi\|... - gi\|17986485\|ref\|NP_539119.1\| LSU ribosomal protein L21P [Brucella melitensis 16M], gi\|17982086\|gb\|AA...	2.0E-32	[9..158]	[2..136]
gi\|45198609, gi\|... - gi\|45198609\|ref\|NP_985638.1\| AFR091Wp [Ashbya gossypii ATCC 10895], gi\|44984560\|gb\|AAS53462.1\| AFR09... gi\|44984560 - gi\|44984560\|gb\|AAS53462.1\| AFR091Wp [Ashbya gossypii ATCC 10895]	5.0E-31	[8..161]	[17..159]
RL21_RALSO - 50S ribosomal protein L21 OS=Ralstonia solanacearum GN=rplU PE=3 SV=1 RL21_RALSO - 50S ribosomal protein L21 OS=Ralstonia solanacearum (strain GMI1000) GN=rplU PE=3 SV=1	3.0E-30	[55..158]	[1..101]
RK21_ARATH - 50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1	4.0E-30	[6..158]	[46..201]
gi\|213971071, gi... - gi\|213971071\|ref\|ZP_03399191.1\| ribosomal protein L21 [Pseudomonas syringae pv. tomato T1], gi\|21392... RL21_PSESM - 50S ribosomal protein L21 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rplU PE=3 SV=1 RL21_PSESM - 50S ribosomal protein L21 OS=Pseudomonas syringae pv. tomato GN=rplU PE=3 SV=1	5.0E-30	[55..159]	[1..102]
RL21_VIBCH - 50S ribosomal protein L21 OS=Vibrio cholerae GN=rplU PE=3 SV=1 gi\|229512635, gi... - gi\|229512635\|ref\|ZP_04402104.1\| LSU ribosomal protein L21p [Vibrio cholerae TMA 21], gi\|229350312\|gb... gi\|229344447, gi... - gi\|229519758\|ref\|ZP_04409201.1\| LSU ribosomal protein L21p [Vibrio cholerae RC9], gi\|229344447\|gb\|EE... gi\|229519995, gi... - gi\|229519995\|ref\|ZP_04409424.1\| LSU ribosomal protein L21p [Vibrio cholerae TM 11079-80], gi\|2293429... gi\|229525128, gi... - gi\|229525128\|ref\|ZP_04414533.1\| LSU ribosomal protein L21p [Vibrio cholerae bv. albensis VL426], gi\|... gi\|229332052, gi... - gi\|229530279\|ref\|ZP_04419667.1\| LSU ribosomal protein L21p [Vibrio cholerae 12129(1)], gi\|229332052\|... RL21_VIBCH - 50S ribosomal protein L21 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... gi\|229606270, gi... - gi\|229606270\|ref\|YP_002876918.1\| LSU ribosomal protein L21p [Vibrio cholerae MJ-1236], gi\|229368925\|... RL21_VIBVU - 50S ribosomal protein L21 OS=Vibrio vulnificus (strain CMCP6) GN=rplU PE=3 SV=1 gi\|254850666, gi... - gi\|254850666\|ref\|ZP_05240016.1\| 50S ribosomal protein L21 [Vibrio cholerae MO10], gi\|254846371\|gb\|EE... RL21_VIBVY - 50S ribosomal protein L21 OS=Vibrio vulnificus (strain YJ016) GN=rplU PE=3 SV=1 gi\|121590772, gi... - gi\|121590772\|ref\|ZP_01678101.1\| ribosomal protein L21 [Vibrio cholerae 2740-80], gi\|121547374\|gb\|EAX... RL21_VIBVU - 50S ribosomal protein L21 OS=Vibrio vulnificus GN=rplU PE=3 SV=1 gi\|153217222, gi... - gi\|153217222\|ref\|ZP_01950986.1\| ribosomal protein L21 [Vibrio cholerae 1587], gi\|124113745\|gb\|EAY325... gi\|126519891, gi... - gi\|229508771\|ref\|ZP_04398263.1\| LSU ribosomal protein L21p [Vibrio cholerae B33], gi\|229354174\|gb\|EE... RL21_VIBHA - 50S ribosomal protein L21 OS=Vibrio harveyi GN=rplU PE=3 SV=1 RL21_VIBCB - 50S ribosomal protein L21 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rplU PE=3 SV=1 RL21_VIBC3 - 50S ribosomal protein L21 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... gi\|148873695, gi... - gi\|153830836\|ref\|ZP_01983503.1\| ribosomal protein L21 [Vibrio cholerae 623-39], gi\|148873695\|gb\|EDL7... gi\|149738661, gi... - gi\|153827418\|ref\|ZP_01980085.1\| ribosomal protein L21 [Vibrio cholerae MZO-2], gi\|149738661\|gb\|EDM53... RL21_VIBCM - 50S ribosomal protein L21 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplU PE=3 SV=1 gi\|229507074, gi... - gi\|229507074\|ref\|ZP_04396580.1\| LSU ribosomal protein L21p [Vibrio cholerae BX 330286], gi\|229355819...	7.0E-30	[55..159]	[1..102]
gi\|22124586, gi\|... - gi\|22124586\|ref\|NP_668009.1\| 50S ribosomal protein L21 [Yersinia pestis KIM], gi\|21957388\|gb\|AAM8426... gi\|45435282, gi\|... - gi\|45440425\|ref\|NP_991964.1\| 50S ribosomal protein L21 [Yersinia pestis biovar Microtus str. 91001],...	7.0E-30	[55..159]	[17..118]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQLKFIWPV ARITPIYRPF TSHPFRNLAT SSSISSTKAK TTKTDTTPLK LSNELYAIFK  60
   61 IHNRPYLVTE GDRVILPFKL KQAEVGDILN MTDVTTLGSR NYKLVGHPIN TSLYTLKATV 120
  121 VGKTKRAFQT REVTKRRNRR VRHAKSKGDL TILRISELSM N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits