YRC Public Data Repository - Protein Structure Prediction

Protein:	GET2
Organism:	Saccharomyces cerevisiae
Length:	285 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GET2.

Description	E-value	Query Range	Subject Range
GET2 - Subunit of the GET complex; involved in insertion of proteins into the ER membrane; required for the...	0.0	[1..285]	[23..307]
GET2_ASHGO - Golgi to ER traffic protein 2 OS=Ashbya gossypii GN=GET2 PE=3 SV=1 GET2_ASHGO - Golgi to ER traffic protein 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL ...	0.0	[1..284]	[1..284]
GET2_CANAL - Golgi to ER traffic protein 2 OS=Candida albicans GN=GET2 PE=3 SV=1 GET2_CANAL - Golgi to ER traffic protein 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=GET2 PE=3 SV=1 GET2_CANAW - Golgi to ER traffic protein 2 OS=Candida albicans (strain WO-1) GN=GET2 PE=3 SV=1	0.0	[2..284]	[9..296]

Back

Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELTEAEKR RLLRERRQKK FSNGGASSRL NKITGQASSH LNAESPLDAP SAAKTTPPAS  60
   61 VHSATPDIKE DSNVAPQLDL LKQLAAMQGQ GTGKSTPQDS STPDLLSLLS SMNTGMPSAE 120
  121 GTPSFGQAAP AAPINQAALD YHDYLLNRLK AWTILVKWVF FLLPYLYLIT RPNSSVWPAY 180
  181 AFTQSAWFAP LRNPSNFTRI FATFEFLSIS IYYQLLKNVE HKSKIKNLQD TNKLVKLVSL 240
  241 VPEGVIPVAN LKGKLITLLQ YWDLLSMLIT DISFVLIVLG LLTYL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits