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View Structure Prediction Details

Protein: URH1
Organism: Saccharomyces cerevisiae
Length: 340 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URH1.

Description E-value Query
Range
Subject
Range
URH1 - Uridine nucleosidase (uridine-cytidine N-ribohydrolase), cleaves N-glycosidic bonds in nucleosides; ...
4.0E-91 [1..340] [39..378]
gi|13472783, gi|... - gi|14023530|dbj|BAB50136.1| nucleoside hydrolase [Mesorhizobium loti MAFF303099], gi|13472783|ref|NP...
2.0E-86 [5..332] [4..312]
gi|237707382, gi... - gi|237707382|ref|ZP_04537863.1| pyrimidine-specific ribonucleoside hydrolase rihA [Escherichia sp. 3...
gi|26107024, gi|... - gi|26246625|ref|NP_752665.1| Hypothetical protein ybeK [Escherichia coli CFT073], gi|26107024|gb|AAN...
gi|91209692, gi|... - gi|91209692|ref|YP_539678.1| hypothetical protein YbeK [Escherichia coli UTI89], gi|91071266|gb|ABE0...
4.0E-86 [2..331] [11..319]
RIHA_ECOLI, YBEK... - (P41409) Hypothetical protein ybeK, Pyrimidine-specific ribonucleoside hydrolase rihA (EC 3.2.-.-) (...
RIHA_ECOBW - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli (strain K12 / MC4100 / BW2952)...
EG12701 - ribonucleoside hydrolase 1 / Ribonucleoside hydrolase, pyrimidine specific
gi|170080230, gi... - gi|170080331|ref|YP_001729651.1| ribonucleoside hydrolase 1 [Escherichia coli str. K-12 substr. DH10...
gi|194439885, gi... - gi|83584753|ref|ZP_00923416.1| COG1957: Inosine-uridine nucleoside N-ribohydrolase [Escherichia coli...
gi|4062271, gi|8... - gi|89107520|ref|AP_001300.1| ribonucleoside hydrolase 1 [Escherichia coli str. K-12 substr. W3110], ...
gi|253972630, gi... - gi|254160729|ref|YP_003043837.1| ribonucleoside hydrolase 1 [Escherichia coli B str. REL606], gi|253...
gi|253976824, gi... - gi|254287517|ref|YP_003053265.1| ribonucleoside hydrolase 1 [Escherichia coli BL21(DE3)], gi|2539768...
gi|242376421, gi... - gi|251784148|ref|YP_002998452.1| hypothetical protein B21_00606 [Escherichia coli BL21], gi|24237642...
EG12701 - ribonucleoside hydrolase 1 / Ribonucleoside hydrolase, pyrimidine specific
2.0E-85 [7..331] [4..308]
gi|168786501, gi... - gi|189373662|gb|EDU92078.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H...
gi|168802439, gi... - gi|189375581|gb|EDU93997.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H...
gi|195939389 - gi|195939389|ref|ZP_03084771.1| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. EC4024]
gi|208725560, gi... - gi|208805759|ref|ZP_03248096.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1...
gi|208815054, gi... - gi|208815054|ref|ZP_03256233.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1...
gi|208822967, gi... - gi|208822967|ref|ZP_03263285.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1...
RIHA_ECO5E - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC)...
gi|217320943, gi... - gi|217324722|ref|ZP_03440806.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1...
gi|188013882, gi... - gi|188013882|gb|EDU52004.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H...
gi|13360148, gi|... - gi|15829944|ref|NP_308717.1| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. Sakai], gi|13...
gi|189354849, gi... - gi|189354849|gb|EDU73268.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H...
gi|189365377, gi... - gi|189365377|gb|EDU83793.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H...
gi|189363460, gi... - gi|189363460|gb|EDU81879.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H...
gi|187767178, gi... - gi|187767178|gb|EDU31022.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H...
gi|168779142, gi... - gi|189003131|gb|EDU72117.1| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H...
gi|254591215, gi... - gi|254791815|ref|YP_003076652.1| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. TW14359],...
RIHA_ECO57 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O157:H7 GN=rihA PE=3 SV=1
gi|209776950, gi... - pir||E85565 probable tRNA synthetase ybeK [imported] - Escherichia coli (strain O157:H7, substrain ...
gi|194417295, gi... - gi|83569108|ref|ZP_00920568.1| COG1957: Inosine-uridine nucleoside N-ribohydrolase [Shigella dysente...
gi|12513558, gi|... - gi|15800365|ref|NP_286377.1| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 EDL933], gi|125135...
2.0E-85 [7..331] [4..308]
gi|30040406, gi|... - gi|30062161|ref|NP_836332.1| ribonucleoside hydrolase 1 [Shigella flexneri 2a str. 2457T], gi|300404...
RIHA_SHIF8 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella flexneri serotype 5b (strain 8401) GN=...
gi|56479705, gi|... - gi|56479705|ref|NP_706560.2| ribonucleoside hydrolase 1 [Shigella flexneri 2a str. 301], gi|56383256...
RIHA_SHIFL - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella flexneri GN=rihA PE=3 SV=4
3.0E-85 [7..331] [4..308]
gi|16759613 - gi|16759613|ref|NP_455230.1| ribonucleoside hydrolase 1 [Salmonella enterica subsp. enterica serovar...
RIHA_SALTI - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella typhi GN=rihA PE=3 SV=1
RIHA_SALPB - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / ...
gi|213052446 - gi|213052446|ref|ZP_03345324.1| ribonucleoside hydrolase 1 [Salmonella enterica subsp. enterica sero...
gi|213425082 - gi|213425082|ref|ZP_03357832.1| ribonucleoside hydrolase 1 [Salmonella enterica subsp. enterica sero...
gi|213647378 - gi|213647378|ref|ZP_03377431.1| ribonucleoside hydrolase 1 [Salmonella enterica subsp. enterica sero...
RIHA_SALTI - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella typhi GN=rihA PE=3 SV=1
gi|29142614, gi|... - gi|29142614|ref|NP_805956.1| ribonucleoside hydrolase 1 [Salmonella enterica subsp. enterica serovar...
RIHA_SALPB - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / ...
gi|168264406, gi... - gi|205347090|gb|EDZ33721.1| inosine-uridine preferring nucleoside hydrolase [Salmonella enterica sub...
3.0E-85 [7..331] [4..308]
RIHA_SALTY - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella typhimurium (strain LT2 / SGSC1412 /...
gi|167990670, gi... - gi|205330855|gb|EDZ17619.1| inosine-uridine preferring nucleoside hydrolase [Salmonella enterica sub...
RIHA_SALTY - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella typhimurium GN=rihA PE=3 SV=1
lcl|NC_016856.1_... - [gene=rihA] [protein=ribonucleoside hydrolase 1] [protein_id=YP_005236376.1] [location=complement(72...
RIHA_SALTY - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella typhimurium GN=rihA PE=3 SV=1
6.0E-85 [7..331] [4..308]
gi|36787557, gi|... - gi|37528120|ref|NP_931465.1| inosine-uridine preferring nucleoside hydrolase (IU-nucleoside hydrolas...
9.0E-83 [3..332] [1..310]

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Predicted Domain #1
Region A:
Residues: [1-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSKIPIWL DCDPGHDDAI AILLGCFHPA FNLLGISTCF GNAPPENTDY NARSLLTAMG  60
   61 KAQAIPVYKG AQRPWKREPH YAPDIHGISG LDGTSLLPKP TFEARTDKTY IEAIEEAILA 120
  121 NNGEISFVST GALTTLATVF RCKPYLKKSV KYISIMGGGL HGLGNCNPNL SAEFNVWIDP 180
  181 DAANYIFRDP DVKDKCIVVP LNLTHKAIAT YKVNEMIYNE KNNSKLRELF LELFQFFAHT 240
  241 YKDMQGFESG PPIHDPVALM PLLEFYGWDP SSAVGFRYKR MDISCIDDVF NENSGKIIIE 300
  301 KEYPNDSDVG TIIGLDLNIQ YFWDQIFEAL NRADKMSTIG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.154902
Match: 1ezrA_
Description: Nucleoside hydrolase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle