| Protein: | MSC2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 724 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSC2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..724] | [1..724] |
|
|
0.0 | [1..719] | [2..690] |
|
|
2.0E-87 | [20..664] | [1..696] |
|
|
4.0E-87 | [51..664] | [41..690] |
|
|
3.0E-78 | [87..696] | [93..725] |
|
|
3.0E-76 | [98..703] | [8..625] |
|
|
8.0E-74 | [28..506] | [39..537] |
|
|
8.0E-74 | [87..696] | [95..729] |
|
Region A: Residues: [1-282] |
1 11 21 31 41 51
| | | | | |
1 MNLQELLAKV PLLLSYPTII LSSNLIVPSH NDLISRAAST SAAEYADEKL IFFSTDHAIR 60
61 LIFLPTFVAS SFNLFAHYFN FINYSSRRKY YVLFTAIYFL SILTAIFHPI QSTCITLLII 120
121 KLLTTADESS PKIALNFKTI LKTFVPFITL TLVILRWDPS FDASSGDVNK ISTSLAAYAL 180
181 LILTLRYASP LILSTLSSSI GVVSKDTSVA QHSISRNKRF PLILVLPIFS FVLLYLMTIV 240
241 NKTYNIQLLM VFVFFGCLSI FFLSLKDLFT EDGNQKKGGQ ED
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [283-372] |
1 11 21 31 41 51
| | | | | |
1 EYCRMFDIKY MISYLWLTRF TILLTGIMAI VVHFLSFNEI TSSIKTDLLS LLFVVVAEYV 60
61 SSFSNKQPDS HSHNHAHHHS HLTDSLPLEN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.846 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
|
Region A: Residues: [373-502] |
1 11 21 31 41 51
| | | | | |
1 ESMFKQMALN KDTRSIFSFL LLNTAFMFVQ LLYSFRSKSL GLLSDSLHMA LDCTSLLLGL 60
61 IAGVLTKKPA SDKFPFGLNY LGTLAGFTNG VLLLGIVCGI FVEAIERIFN PIHLHATNEL 120
121 LVVATLGLLV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| transporter activity | 4.27173462293249 | bayes_pls_golite062009 |
|
Region A: Residues: [503-724] |
1 11 21 31 41 51
| | | | | |
1 NLVGLFAFDH GAHDHGGTDN ENMKGIFLHI LADTLGSVGV VISTLLIKLT HWPIFDPIAS 60
61 LLIGSLILLS ALPLLKSTSA NILLRLDDKK HNLVKSALNQ ISTTPGITGY TTPRFWPTES 120
121 GSSGHSHAHT HSHAENHSHE HHHDQKNGSQ EHPSLVGYIH VQYVDGENST IIKKRVEKIF 180
181 ENVSIKAWVQ VEPQNSTCWC RATSMNTISA NPNSLPLQPI AN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
