| Protein: | SCM3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 223 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCM3.
| Description | E-value | Query Range |
Subject Range |
|
|
298.0 | [0..1] | [223..25] |
|
|
186.0 | [0..56] | [206..4] |
|
|
160.0 | [0..19] | [199..16] |
|
|
137.0 | [0..55] | [143..3] |
|
|
136.0 | [0..55] | [143..3] |
|
|
115.0 | [0..1] | [194..2] |
|
|
108.0 | [0..15] | [195..20] |
|
|
98.0 | [0..88] | [151..23] |
|
|
94.0 | [0..81] | [153..62] |
|
|
92.0 | [0..90] | [149..36] |
|
Region A: Residues: [1-71] |
1 11 21 31 41 51
| | | | | |
1 MKTNKKISKR RSLKNLHGAL KGLLKESGKK SESKIRKHSD CNPVHRVYPP NIEKRKTKKD 60
61 DGISRPIAER N
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.447 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.447 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.390 | a.159.2 | FF domain |
| View | Download | 0.371 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.371 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.353 | a.64.1 | Saposin |
| View | Download | 0.350 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.341 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.287 | a.60.1 | SAM/Pointed domain |
|
Region A: Residues: [72-223] |
1 11 21 31 41 51
| | | | | |
1 GHVYIMSKEN HIIPKLTDDE VMERHKLADE NMRKVWSNII SKYESIEEQG DLVDLKTGEI 60
61 VEDNGHIKTL TANNSTKDKR TKYTSVLRDI IDISDEEDGD KNDEYTLWAN DSEASDSEVD 120
121 ADNDTEEEKD EKLIDADFKK YEAKLSKRIL RD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.270 | N/A | N/A | a.2.5 | Prefoldin |
| View | Download | 0.247 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.243 | N/A | N/A | d.83.1 | Bactericidal permeability-increasing protein, BPI |
| View | Download | 0.235 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.232 | N/A | N/A | a.91.1 | Regulator of G-protein signalling, RGS |
