YRC Public Data Repository - Protein Structure Prediction

Protein:	YPR153W
Organism:	Saccharomyces cerevisiae
Length:	144 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR153W.

Description	E-value	Query Range	Subject Range
gi\|115361657 - gi\|115361657\|gb\|ABI95880.1\| Ypr153wp [Saccharomyces cerevisiae]	195.0	[0..5]	[127..1]
gi\|49528454, gi\|... - gi\|50293459\|ref\|XP_449141.1\| unnamed protein product [Candida glabrata], gi\|49528454\|emb\|CAG62111.1\|... gi\|49528454 - gi\|49528454\|emb\|CAG62111.1\| unnamed protein product [Candida glabrata]	178.0	[0..5]	[144..1]
gi\|28918103, gi\|... - gi\|32403012\|ref\|XP_322119.1\| hypothetical protein [Neurospora crassa], gi\|28918103\|gb\|EAA27784.1\| hy... gi\|85082945 - gi\|85082945\|ref\|XP_957020.1\| hypothetical protein [Neurospora crassa OR74A]	133.0	[0..46]	[143..1]
gi\|49647873 - gi\|49647873\|emb\|CAG82326.1\| YALI0C19283p [Yarrowia lipolytica] gi\|50549071, gi\|... - gi\|50549071\|ref\|XP_502006.1\| YALI0C19283p [Yarrowia lipolytica], gi\|49647873\|emb\|CAG82326.1\| unnamed...	118.0	[0..14]	[144..10]
gi\|111057731 - gi\|111057731\|gb\|EAT78851.1\| hypothetical protein SNOG_13827 [Phaeosphaeria nodorum SN15]	109.0	[0..14]	[143..14]
gi\|66852812, gi\|... - gi\|71000986\|ref\|XP_755174.1\| integral membrane protein [Aspergillus fumigatus Af293], gi\|66852812\|gb... gi\|159129265 - gi\|159129265\|gb\|EDP54379.1\| integral membrane protein [Aspergillus fumigatus A1163]	104.0	[0..9]	[143..1]
gi\|50308237, gi\|... - gi\|50308237\|ref\|XP_454119.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643254\|emb\|CAG9920...	101.0	[0..30]	[144..1]
gi\|50416388, gi\|... - gi\|50416388\|ref\|XP_457548.1\| hypothetical protein DEHA0B13948g [Debaryomyces hansenii CBS767], gi\|49...	101.0	[0..5]	[137..1]
gi\|44984866 - gi\|44984866\|gb\|AAS53690.1\| AFR319Wp [Ashbya gossypii ATCC 10895] gi\|44984866, gi\|... - gi\|45198837\|ref\|NP_985866.1\| AFR319Wp [Ashbya gossypii ATCC 10895], gi\|44984866\|gb\|AAS53690.1\| AFR31...	97.0	[0..15]	[144..13]
gi\|238880738 - gi\|238880738\|gb\|EEQ44376.1\| conserved hypothetical protein [Candida albicans WO-1] orf19.7984, orf1... - orf19.351 CGDID:CAL0004821 Assembly 19, Contig19-10046 (225744, 226211) CDS, translated using codon ... gi\|68472006, gi\|... - gi\|68472006\|ref\|XP_720046.1\| hypothetical protein CaO19.351 [Candida albicans SC5314], gi\|68471745\|r...	93.0	[0..8]	[138..4]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPVLRSFVT NNDIPVGYVT PKFPSLYWPI NNSKYNTAFL YYISDIWKFS LYWTLIFNGA  60
   61 FYVTAGVYAS LTHRKKAGSV WIFVMYVLYG GVQGLTTGTV MGFLIGAIYR SGLFSMSTWV 120
  121 PLCCAVVQIL FDVVLSYSMV GSVM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.915	a.79.1	Antitermination factor NusB

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits