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View Structure Prediction Details

Protein: RRP15
Organism: Saccharomyces cerevisiae
Length: 250 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP15.

Description E-value Query
Range
Subject
Range
gi|11177505 - gi|11177505|gb|AAG32307.1|AF284694_2 acetyl-CoA carboxylase subunit [Carpobrotus chilensis]
3.0E-66 [10..245] [102..326]
ACCD_SOYBN - (P49158) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (ACCASE beta c...
1.0E-63 [30..245] [102..304]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
1.0E-63 [32..245] [181..377]
ACCD_TOBAC - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Nicotiana tabacum GN=accD PE=3 SV...
gi|77799571, gi|... - gi|78102544|ref|YP_358685.1| acetyl-CoA carboxylase beta subunit [Nicotiana sylvestris], gi|77799571...
4.0E-63 [32..245] [186..382]
ACCD_CUSRE - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta - Cuscuta reflexa (Southern Asian do...
7.0E-63 [5..245] [101..357]
ACCD_SPIOL - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Spinacia oleracea GN=accD PE=3 SV...
7.0E-63 [27..245] [193..393]
ACCD_LOTJA - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Lotus japonicus GN...
1.0E-62 [31..245] [170..370]
ACCD_BRANA - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Brassica napus GN=accD PE=3 SV=1
5.0E-61 [27..245] [165..361]
ACCD_ARATH - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Arabidopsis thaliana GN=accD PE=1...
2.0E-60 [30..245] [172..363]
ACCD_EPIVI - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Epifagus virginiana GN=accD PE=3 ...
5.0E-58 [40..245] [180..370]

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Predicted Domain #1
Region A:
Residues: [1-59]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKHRVDTK DKKRTRKNAE FGREKRNSGN QELSNEPEKD TIMEGDEAEE DEQNSSSDE

[Run NCBI BLAST on this sequence.]

Detection Method: Pcons
Confidence: 1.83
Match: 1c1gA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [60-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSKIIDNEQS DAEEDDDEEE EDDDFPRKKK SKNSKHDDGS TGFSAAVNAI LSSHLKAYDR  60
   61 KDPIMARNKK VLKQSESEKL EYKAKKALLA EKKKLLGKAR KTDIIPIASG EDRSENIRKV 120
  121 LEKETALRKI AQKGAVKLFN AILATQVKTE KEVSENLSEI KNKEEKKELI TEVSKEKFLD 180
  181 LVKAAAGSDN E

[Run NCBI BLAST on this sequence.]

Detection Method: Pcons
Confidence: 1.83
Match: 1c1gA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 2.00129843720424 bayes_pls_golite062009
ligase activity 1.98077174557863 bayes_pls_golite062009
catalytic activity 1.46154163027498 bayes_pls_golite062009
nucleic acid binding 0.862926651283562 bayes_pls_golite062009
CoA carboxylase activity 0.745565725576299 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 0.667340452132993 bayes_pls_golite062009
binding 0.613197835889791 bayes_pls_golite062009
acetyl-CoA carboxylase activity 0.567749459702602 bayes_pls_golite062009
mRNA binding 0.45378771470672 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle