YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MSS18
Organism: Saccharomyces cerevisiae
Length: 268 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSS18.

Description E-value Query
Range
Subject
Range
gi|207340261 - gi|207340261|gb|EDZ68666.1| YPR134Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|151942908 - gi|151942908|gb|EDN61254.1| mitochondrial splicing system relatd protein [Saccharomyces cerevisiae Y...
MSS18 - Nuclear encoded protein needed for efficient splicing of mitochondrial COX1 aI5beta intron; mss18 mu...
MSS18_YEAST - Protein MSS18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSS18 PE=1 SV=1
0.0 [1..268] [1..268]

Back

Predicted Domain #1
Region A:
Residues: [1-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLPEVNFLR KNCILVELKL FYQTVYPPKE LYWNNRITAE LSTFSNIKYA RPTFAVNNGT  60
   61 FQRTRPKLDL VLASSDIRKL ATVLFNLKAL IMNTKGEEPT LTTMTSVQTN EEKNDNLEQK 120
  121 YSSLLDRWNG KVEVHDSPFL QLQRDSNLLF AERPVRYVST TEGEGVDISS EEFFRLEEEQ 180
  181 CRRNYDVLVD EHSTPSVGMK DGQYGPNIIH FEPSLYHTYS SLPMSMKFWL NGLEDDETTM 240
  241 MNIDEKSAEN LDILLHGFKG FSNKRVKG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle