| Protein: | SPN1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 410 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPN1.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-78 | [121..409] | [1..281] |
|
|
7.0E-76 | [137..409] | [1..265] |
|
|
3.0E-73 | [1..410] | [1..410] |
|
|
8.0E-65 | [69..409] | [5..342] |
|
|
2.0E-62 | [6..404] | [2..415] |
|
|
2.0E-55 | [20..407] | [5..388] |
|
|
2.0E-54 | [5..409] | [62..495] |
|
Region A: Residues: [1-227] |
1 11 21 31 41 51
| | | | | |
1 MSTADQEQPK VVEATPEDGT ASSQKSTINA ENENTKQNQS MEPQETSKGT SNDTKDPDNG 60
61 EKNEEAAIDE NSNVEAAERK RKHISTDFSD DDLEKEEHND QSLQPTVENR ASKDRDSSAT 120
121 PSSRQELEEK LDRILKKPKV RRTRRDEDDL EQYLDEKILR LKDEMNIAAQ LDIDTLNKRI 180
181 ETGDTSLIAM QKVKLLPKVV SVLSKANLAD TILDNNLLQS VRIWLEP
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [228-280] |
1 11 21 31 41 51
| | | | | |
1 LPDGSLPSFE IQKSLFAALN DLPVKTEHLK ESGLGRVVIF YTKSKRVEAQ LAR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.437 | a.4.1 | Homeodomain-like |
| View | Download | 0.430 | a.4.1 | Homeodomain-like |
| View | Download | 0.395 | a.4.1 | Homeodomain-like |
| View | Download | 0.349 | a.4.1 | Homeodomain-like |
| View | Download | 0.329 | a.4.1 | Homeodomain-like |
| View | Download | 0.313 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.263 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.262 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.246 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.240 | a.4.10 | N-terminal Zn binding domain of HIV integrase |
| View | Download | 0.232 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.221 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.221 | a.50.1 | Anaphylotoxins (complement system) |
|
Region A: Residues: [281-410] |
1 11 21 31 41 51
| | | | | |
1 LAEKLIAEWT RPIIGASDNY RDKRIMQLEF DSEKLRKKSV MDSAKNRKKK SKSGEDPTSR 60
61 GSSVQTLYEQ AAARRNRAAA PAQTTTDYKY APVSNLSAVP TNARAVGVGS TLNNSEMYKR 120
121 LTSRLNKKHK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.223 | 0.209 | RNA elongation from RNA polymerase II promoter | a.1.1 | Globin-like |
| View | Download | 0.234 | 0.043 | RNA elongation from RNA polymerase II promoter | a.118.8 | TPR-like |
