| Protein: | RPN7 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 429 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPN7.
| Description | E-value | Query Range |
Subject Range |
|
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3.0E-74 | [1..429] | [1..429] |
|
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6.0E-74 | [12..423] | [5..389] |
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6.0E-74 | [12..423] | [5..389] |
|
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4.0E-73 | [12..423] | [5..389] |
|
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1.0E-69 | [12..423] | [5..386] |
|
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6.0E-68 | [12..422] | [5..388] |
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2.0E-66 | [21..423] | [10..387] |
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2.0E-66 | [21..423] | [12..389] |
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2.0E-65 | [21..423] | [10..406] |
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3.0E-65 | [15..428] | [4..491] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MVDVEEKSQE VEYVDPTVNR VPNYEVSEKA FLLTQSKVSI EQRKEAAEFV LAKIKEEEMA 60
61 PYYKYLCEEY LVNNGQSDLE HDEKSDSLNE
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.557 | 0.181 | structural molecule activity | a.118.1 | ARM repeat |
| View | Download | 0.481 | 0.015 | ubiquitin-dependent protein catabolic process | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.470 | 0.014 | ubiquitin-dependent protein catabolic process | a.74.1 | Cyclin-like |
| View | Download | 0.520 | 0.002 | ubiquitin-dependent protein catabolic process | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.557 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.520 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.481 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.470 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.428 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.428 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.413 | N/A | N/A | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.396 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.373 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.362 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.351 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.346 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.332 | N/A | N/A | d.211.1 | Ankyrin repeat |
| View | Download | 0.317 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.306 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.303 | N/A | N/A | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.301 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.297 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.293 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.277 | N/A | N/A | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.270 | N/A | N/A | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.236 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.232 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.230 | N/A | N/A | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.213 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.208 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.206 | N/A | N/A | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.206 | N/A | N/A | a.77.1 | DEATH domain |
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Region A: Residues: [91-271] |
1 11 21 31 41 51
| | | | | |
1 WIKFDQELYN ELCKKNESKI KELNEKIQKL EEDDEGELEQ AQAWINLGEY YAQIGDKDNA 60
61 EKTLGKSLSK AISTGAKIDV MLTIARLGFF YNDQLYVKEK LEAVNSMIEK GGDWERRNRY 120
121 KTYYGIHCLA VRNFKEAAKL LVDSLATFTS IELTSYESIA TYASVTGLFT LERTDLKSKV 180
181 I
|
| Detection Method: | |
| Confidence: | 5.39794 |
| Match: | 1na0A_ |
| Description: | Designed protein cTPR3 |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [272-429] |
1 11 21 31 41 51
| | | | | |
1 DSPELLSLIS TTAALQSISS LTISLYASDY ASYFPYLLET YANVLIPCKY LNRHADFFVR 60
61 EMRRKVYAQL LESYKTLSLK SMASAFGVSV AFLDNDLGKF IPNKQLNCVI DRVNGIVETN 120
121 RPDNKNAQYH LLVKQGDGLL TKLQKYGAAV RLTGSDRV
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [319-429] |
1 11 21 31 41 51
| | | | | |
1 CKYLNRHADF FVREMRRKVY AQLLESYKTL SLKSMASAFG VSVAFLDNDL GKFIPNKQLN 60
61 CVIDRVNGIV ETNRPDNKNA QYHLLVKQGD GLLTKLQKYG AAVRLTGSDR V
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| Detection Method: | |
| Confidence: | 11.045757 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
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