YRC Public Data Repository - Protein Structure Prediction

Protein:	FCY1
Organism:	Saccharomyces cerevisiae
Length:	158 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FCY1.

Description	E-value	Query Range	Subject Range
gi\|23467634 - gi\|23467634\|ref\|ZP_00123214.1\| COG0590: Cytosine/adenosine deaminases [Haemophilus somnus 129PT]	4.0E-45	[6..156]	[1..159]
gi\|27363814, gi\|... - gi\|27363814\|ref\|NP_759342.1\| cytosine/adenosine deaminase [Vibrio vulnificus CMCP6], gi\|27359931\|gb\|...	4.0E-44	[10..158]	[11..166]
gi\|15640880, gi\|... - gi\|9655317\|gb\|AAF94026.1\| yfhC protein [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15640880\|r... gi\|11356318 - pir\|\|D82271 yfhC protein VC0864 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|229357748, gi... - gi\|229505525\|ref\|ZP_04395035.1\| tRNA-specific adenosine-34 deaminase [Vibrio cholerae BX 330286], gi... gi\|227008928, gi... - gi\|227081040\|ref\|YP_002809591.1\| yfhC protein [Vibrio cholerae M66-2], gi\|227008928\|gb\|ACP05140.1\| y... gi\|121629376, gi... - gi\|121728321\|ref\|ZP_01681351.1\| zinc-binding domain protein [Vibrio cholerae V52], gi\|121629376\|gb\|E... gi\|121585742, gi... - gi\|121585742\|ref\|ZP_01675537.1\| zinc-binding domain protein [Vibrio cholerae 2740-80], gi\|121550105\|... gi\|124122416, gi... - gi\|153802057\|ref\|ZP_01956643.1\| zinc-binding domain protein [Vibrio cholerae MZO-3], gi\|124122416\|gb... gi\|153224101, gi... - gi\|153224101\|ref\|ZP_01954225.1\| zinc-binding domain protein [Vibrio cholerae MAK 757], gi\|124117861\|... gi\|126510441, gi... - gi\|153819008\|ref\|ZP_01971675.1\| zinc-binding domain protein [Vibrio cholerae NCTC 8457], gi\|12651044... gi\|229608545, gi... - gi\|229608545\|ref\|YP_002879193.1\| tRNA-specific adenosine-34 deaminase [Vibrio cholerae MJ-1236], gi\|... gi\|254848002, gi... - gi\|254848002\|ref\|ZP_05237352.1\| zinc-binding domain-containing protein [Vibrio cholerae MO10], gi\|25... gi\|229517925, gi... - gi\|229517925\|ref\|ZP_04407369.1\| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC9], gi\|22934... gi\|126519394, gi... - gi\|229510804\|ref\|ZP_04400283.1\| tRNA-specific adenosine-34 deaminase [Vibrio cholerae B33], gi\|22935... gi\|227012684, gi... - gi\|227117234\|ref\|YP_002819130.1\| yfhC protein [Vibrio cholerae O395], gi\|227012684\|gb\|ACP08894.1\| yf...	4.0E-44	[1..154]	[18..178]
gi\|228657922, gi... - gi\|229125538\|ref\|ZP_04254572.1\| hypothetical protein bcere0015_100 [Bacillus cereus BDRD-Cer4], gi\|2... gi\|30018294, gi\|... - gi\|30018294\|ref\|NP_829925.1\| cytosine deaminase [Bacillus cereus ATCC 14579], gi\|29893834\|gb\|AAP0712...	2.0E-43	[6..156]	[1..158]
TADA_HAEIN, YFHC... - (P44931) Hypothetical protein HI0906, tRNA-specific adenosine deaminase OS=Haemophilus influenzae GN... TADA_HAEIN - tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / ...	2.0E-43	[1..156]	[1..164]
TADA_SHIFL - tRNA-specific adenosine deaminase (EC 3.5.4.-) - Shigella flexneri gi\|218352918, gi... - gi\|218696186\|ref\|YP_002403853.1\| tRNA-specific adenosine deaminase [Escherichia coli 55989], gi\|2183... gi\|24113886, gi\|... - gi\|24113886\|ref\|NP_708396.1\| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 301], gi\|2... gi\|218361852, gi... - gi\|218555084\|ref\|YP_002387997.1\| tRNA-specific adenosine deaminase [Escherichia coli IAI1], gi\|21836... gi\|254289295, gi... - gi\|254289295\|ref\|YP_003055043.1\| tRNA-specific adenosine deaminase [Escherichia coli BL21(DE3)], gi\|... gi\|218547914, gi... - gi\|218547914\|ref\|YP_002381705.1\| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC 3546... YFHC_ECOLI, TADA... - (P30134) Hypothetical protein yfhC, tRNA-specific adenosine deaminase (EC 3.5.4.-) - Escherichia col... gi\|209920038, gi... - gi\|209920038\|ref\|YP_002294122.1\| tRNA-specific adenosine deaminase [Escherichia coli SE11], gi\|20991... gi\|30042202, gi\|... - gi\|30063946\|ref\|NP_838117.1\| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 2457T], gi... gi\|82545011, gi\|... - gi\|82545011\|ref\|YP_408958.1\| tRNA-specific adenosine deaminase [Shigella boydii Sb227], gi\|81246422\|... gi\|1788911, gi\|1... - gi\|1788911\|gb\|AAC75612.1\| tRNA-specific adenosine deaminase [Escherichia coli K12], gi\|16130484\|ref\|... gi\|85675450, gi\|... - gi\|89109365\|ref\|AP_003145.1\| tRNA-specific adenosine deaminase [Escherichia coli str. K-12 substr. W... gi\|157067716, gi... - gi\|157162036\|ref\|YP_001459354.1\| tRNA-specific adenosine deaminase [Escherichia coli HS], gi\|1570677... gi\|1033148\|gb\|AA... - alternate name yfhC; orf178 of GenBank Accession Number X72336 gi\|188491218, gi... - gi\|188496019\|ref\|ZP_03003289.1\| tRNA-specific adenosine deaminase [Escherichia coli 53638], gi\|18849... gi\|187427445, gi... - gi\|187730453\|ref\|YP_001881338.1\| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94], gi... gi\|253974435, gi... - gi\|254162534\|ref\|YP_003045642.1\| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606],... gi\|251785887, gi... - gi\|251785887\|ref\|YP_003000191.1\| hypothetical protein B21_02417 [Escherichia coli BL21], gi\|24237816...	3.0E-43	[11..156]	[19..171]
gi\|15601943, gi\|... - gi\|15601943\|ref\|NP_245015.1\| hypothetical protein PM0078 [Pasteurella multocida subsp. multocida str...	5.0E-43	[6..158]	[1..161]
gi\|16761480 - gi\|16761480\|ref\|NP_457097.1\| tRNA-specific adenosine deaminase [Salmonella enterica subsp. enterica ... TADA_SALTI - tRNA-specific adenosine deaminase (EC 3.5.4.-) - Salmonella typhi gi\|16421115, gi\|... - gi\|16765888\|ref\|NP_461503.1\| tRNA-specific adenosine deaminase [Salmonella typhimurium LT2], gi\|1642... TADA_SALTY - tRNA-specific adenosine deaminase (EC 3.5.4.-) - Salmonella typhimurium gi\|29136448, gi\|... - gi\|29140823\|ref\|NP_804165.1\| tRNA-specific adenosine deaminase [Salmonella enterica subsp. enterica ... gi\|62181133, gi\|... - gi\|62181133\|ref\|YP_217550.1\| tRNA-specific adenosine deaminase [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=yfhC] [protein=tRNA-specific adenosine deaminase] [protein_id=YP_005238675.1] [location=comple... gi\|16503780, gi\|... - gi\|25303877\|pir\|\|AF0827 conserved hypothetical protein STY2814 [imported] - Salmonella enterica subs... gi\|224582890, gi... - gi\|224582890\|ref\|YP_002636688.1\| hypothetical protein SPC_1081 [Salmonella enterica subsp. enterica ...	7.0E-43	[10..156]	[18..171]
gi\|116094620, gi... - gi\|23003746\|ref\|ZP_00047397.1\| hypothetical protein Lgas_03001770 [Lactobacillus gasseri ATCC 33323]... gi\|226820266 - gi\|226820266\|ref\|ZP_03809385.1\| cytosine/adenosine deaminase [Lactobacillus gasseri MV-22] gi\|238853616, gi... - gi\|238853616\|ref\|ZP_04643985.1\| tRNA-specific adenosine deaminase [Lactobacillus gasseri 202-4], gi\|... gi\|23003746 - gi\|23003746\|ref\|ZP_00047397.1\| COG0590: Cytosine/adenosine deaminases [Lactobacillus gasseri]	7.0E-43	[6..156]	[1..160]
gi\|11245466 - gi\|11245466\|gb\|AAG33626.1\|AF312392_1 cytosine deaminase-uracil phosphoribosyltransferase fusion prot...	1.0E-42	[1..158]	[1..158]

Back

Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTGGMASKW DQKGMDIAYE EAALGYKEGG VPIGGCLINN KDGSVLGRGH NMRFQKGSAT  60
   61 LHGEISTLEN CGRLEGKVYK DTTLYTTLSP CDMCTGAIIM YGIPRCVVGE NVNFKSKGEK 120
  121 YLQTRGHEVV VVDDERCKKI MKQFIDERPQ DWFEDIGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	922.39794
Match:	1uaqA_
Description:	Cytosine deaminase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits