| Protein: | SRO7 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1033 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRO7.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1033] | [1..1033] |
|
|
0.0 | [20..673] | [1160..1757] |
|
|
0.0 | [1..682] | [878..1500] |
|
Region A: Residues: [1-338] |
1 11 21 31 41 51
| | | | | |
1 MFGSKRLKNV KEAFKSLKGQ NSETPIENSK ASFKSKNSKT STISKDAKSS SSLKIPISSN 60
61 NKNKIFSLAE TNKYGMSSKP IAAAFDFTQN LLAIATVTGE VHIYGQQQVE VVIKLEDRSA 120
121 IKEMRFVKGI YLVVINAKDT VYVLSLYSQK VLTTVFVPGK ITSIDTDASL DWMLIGLQNG 180
181 SMIVYDIDRD QLSSFKLDNL QKSSFFPAAR LSPIVSIQWN PRDIGTVLIS YEYVTLTYSL 240
241 VENEIKQSFI YELPPFAPGG DFSEKTNEKR TPKVIQSLYH PNSLHIITIH EDNSLVFWDA 300
301 NSGHMIMART VFETEINVPQ PDYIRDSSTN AAKISKVY
|
| Detection Method: |  |
| Confidence: | 64.69897 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [339-451] |
1 11 21 31 41 51
| | | | | |
1 WMCENNPEYT SLLISHKSIS RGDNQSLTMI DLGYTPRYSI TSYEGMKNYY ANPKQMKIFP 60
61 LPTNVPIVNI LPIPRQSPYF AGCHNPGLIL LILGNGEIET MLYPSGIFTD KAS
|
| Detection Method: | |
| Confidence: | 2.522879 |
| Match: | 1c5kA_ |
| Description: | TolB, C-terminal domain; TolB, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [452-623] |
1 11 21 31 41 51
| | | | | |
1 LFPQNLSWLR PLATTSMAAS VPNKLWLGAL SAAQNKDYLL KGGVRTKRQK LPAEYGTAFI 60
61 TGHSNGSVRI YDASHGDIQD NASFEVNLSR TLNKAKELAV DKISFAAETL ELAVSIETGD 120
121 VVLFKYEVNQ FYSVENRPES GDLEMNFRRF SLNNTNGVLV DVRDRAPTGV RQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [624-714] |
1 11 21 31 41 51
| | | | | |
1 GFMPSTAVHA NKGKTSAINN SNIGFVGIAY AAGSLMLIDR RGPAIIYMEN IREISGAQSA 60
61 CVTCIEFVIM EYGDDGYSSI LMVCGTDMGE V
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.877 | 0.762 | Golgi to plasma membrane transport | b.1.1 | Immunoglobulin |
|
Region A: Residues: [715-1033] |
1 11 21 31 41 51
| | | | | |
1 ITYKILPASG GKFDVQLMDI TNVTSKGPIH KIDAFSKETK SSCLATIPKM QNLSKGLCIP 60
61 GIVLITGFDD IRLITLGKSK STHKGFKYPL AATGLSYIST VEKNNDRKNL TVIITLEING 120
121 HLRVFTIPDF KEQMSEHIPF PIAAKYITES SVLRNGDIAI RVSEFQASLF STVKEQDTLA 180
181 PVSDTLYING IRIPYRPQVN SLQWARGTVY CTPAQLNELL GGVNRPASKY KESIIAEGSF 240
241 SERSSDDNNA NHPEHQYTKP TRKGRNSSYG VLRNVSRAVE TRWDAVEDRF NDYATAMGET 300
301 MNEAVEQTGK DVMKGALGF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
