YRC Public Data Repository - Protein Structure Prediction

Protein:	YOP1
Organism:	Saccharomyces cerevisiae
Length:	180 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOP1.

Description	E-value	Query Range	Subject Range
gi\|74220170, gi\|... - gi\|74220170\|dbj\|BAE31270.1\| unnamed protein product [Mus musculus], gi\|74214621\|dbj\|BAE31151.1\| unna...	4.0E-48	[5..175]	[2..174]
gi\|182403 - gi\|182403\|gb\|AAA66351.1\| TB2	1.0E-47	[5..175]	[14..186]
YOP1 - Membrane protein that interacts with Yip1p to mediate membrane traffic; interacts with Sey1p to main... YOP1_YEAST - Protein YOP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOP1 PE=1 SV=3 gi\|151942817 - gi\|151942817\|gb\|EDN61163.1\| Yip1p-interacting protein [Saccharomyces cerevisiae YJM789] gi\|190407972 - gi\|190407972\|gb\|EDV11237.1\| protein YOP1 [Saccharomyces cerevisiae RM11-1a]	7.0E-47	[1..180]	[1..180]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-47	[5..175]	[2..174]
gi\|17861922 - gi\|17861922\|gb\|AAL39438.1\| GM14577p [Drosophila melanogaster]	1.0E-46	[1..180]	[9..177]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEYASSIHS QMKQFDTKYS GNRILQQLEN KTNLPKSYLV AGLGFAYLLL IFINVGGVGE  60
   61 ILSNFAGFVL PAYLSLVALK TPTSTDDTQL LTYWIVFSFL SVIEFWSKAI LYLIPFYWFL 120
  121 KTVFLIYIAL PQTGGARMIY QKIVAPLTDR YILRDVSKTE KDEIRASVNE ASKATGASVH 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.309804
Match:	PF03134
Description:	TB2/DP1, HVA22 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits