YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL276W
Organism:	Saccharomyces cerevisiae
Length:	145 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL276W.

Description	E-value	Query Range	Subject Range
SERA_ARCFU - D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 /... SERA_ARCFU - D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1	1.0E-34	[21..145]	[1..120]
FDH1_YEAST - Formate dehydrogenase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FDH1 PE=1 SV=1 FDH1 - NAD(+)-dependent formate dehydrogenase, may protect cells from exogenous formate FDH1_YEAS8 - Formate dehydrogenase 1 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=FDH1... FDH1_YEAS7 - Formate dehydrogenase 1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FDH1 PE=2 SV=1 FDH1_YEASC - Formate dehydrogenase 1 OS=Saccharomyces cerevisiae (strain CEN.PK113-7D) GN=FDH1 PE=2 SV=1	6.0E-34	[1..145]	[1..145]
SERA_METJA - D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1 SERA_METJA - D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / ...	6.0E-34	[20..143]	[1..118]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-33	[1..145]	[1..145]
gi\|19886634, gi\|... - gi\|20093737\|ref\|NP_613584.1\| D-3-phosphoglycerate dehydrogenase [Methanopyrus kandleri AV19], gi\|198...	1.0E-32	[20..145]	[1..120]
gi\|14601656, gi\|... - gi\|5105521\|dbj\|BAA80834.1\| 347aa long hypothetical D-3-phosphoglycerate dehydrogenase [Aeropyrum per... gi\|7431353 - pir\|\|E72568 probable D-3-phosphoglycerate dehydrogenase APE1831 - Aeropyrum pernix (strain K1)	6.0E-32	[17..144]	[12..136]
gi\|20808958, gi\|... - gi\|20808958\|ref\|NP_624129.1\| D-3-phosphoglycerate dehydrogenase [Thermoanaerobacter tengcongensis MB... gi\|20808958 - ref\|NP_624129.1\| Phosphoglycerate dehydrogenase and related dehydrogenases [Thermoanaerobacter tengc...	1.0E-31	[21..144]	[1..118]
gi\|25283945 - pir\|\|AG3295 phosphoglycerate dehydrogenase (EC 1.1.1.95) [imported] - Brucella melitensis (strain 16... gi\|17986632, gi\|... - gi\|17986632\|ref\|NP_539266.1\| D-3-phosphoglycerate dehydrogenase [Brucella melitensis 16M], gi\|179822...	3.0E-31	[15..144]	[2..128]
gi\|7431373 - pir\|\|A70464 D-3-phosphoglycerate dehydrogenase - Aquifex aeolicus gi\|15606928, gi\|... - gi\|2984165\|gb\|AAC07698.1\| D-3-phosphoglycerate dehydrogenase [Aquifex aeolicus VF5], gi\|15606928\|ref...	6.0E-31	[20..145]	[1..122]
gi\|21227855, gi\|... - gi\|21227855\|ref\|NP_633777.1\| D-3-phosphoglycerate dehydrogenase [Methanosarcina mazei Go1], gi\|20906...	6.0E-31	[5..144]	[3..135]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKGKVLLVL YEGGKHAEEQ EKLLGCIENE LGIRNFIEEQ GYELVTTIDK DPEPTSTVDR  60
   61 ELKDAEIVIT TPFFPAYISR NRIAEAPNLK LCVTAGVGSD HVDLEAANER KITVTEVTGS 120
  121 NVVSVAEHVM ATILVLIRNY NGGHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	369.40824
Match:	2nacA_
Description:	Formate dehydrogenase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits