YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP15
Organism:	Saccharomyces cerevisiae
Length:	62 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP15.

Description	E-value	Query Range	Subject Range
gi\|55243554, gi\|... - gi\|58380900\|ref\|XP_310858.2\| ENSANGP00000012584 [Anopheles gambiae str. PEST], gi\|55243554\|gb\|EAA067...	90.0	[0..1]	[56..30]
gi\|21068676 - gi\|21068676\|emb\|CAD31844.1\| putative epsilon subunit of mitochondrial F1-ATPase [Cicer arietinum]	83.0	[0..4]	[61..10]
ATP5E_ARATH - ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3	82.0	[0..4]	[61..10]
ATP5E_IPOBA - ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2	81.0	[0..4]	[61..10]
gi\|108880366, gi... - gi\|157104381\|ref\|XP_001648382.1\| hypothetical protein AaeL_AAEL004060 [Aedes aegypti], gi\|108880366\|...	80.0	[0..1]	[56..1]
sun-PA - The gene stunted is referred to in FlyBase by the symbol Dmel\sun (CG9032, FBgn0014391). It is a pro... gi\|194202719, gi... - gi\|195553727\|ref\|XP_002076729.1\| GD24676 [Drosophila simulans], gi\|194202719\|gb\|EDX16295.1\| GD24676 ... gi\|220950884, gi... - gi\|220959532\|gb\|ACL92309.1\| sun-PA [synthetic construct], gi\|220950884\|gb\|ACL87985.1\| sun-PA [synthe... gi\|194129492, gi... - gi\|195355447\|ref\|XP_002044203.1\| GM22520 [Drosophila sechellia], gi\|194129492\|gb\|EDW51535.1\| GM22520... gi\|194188258, gi... - gi\|195479017\|ref\|XP_002100734.1\| GE16014 [Drosophila yakuba], gi\|194188258\|gb\|EDX01842.1\| GE16014 [D... gi\|194894162, gi... - gi\|194894162\|ref\|XP_001978021.1\| GG19366 [Drosophila erecta], gi\|190649670\|gb\|EDV46948.1\| GG19366 [D...	80.0	[0..1]	[58..1]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAWRKAGIS YAAYLNVAAQ AIRSSLKTEL QTASVLNRSQ TDAFYTQYKN GTAASEPTPI  60
   61 TK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.621	a.4.1	Homeodomain-like
View	Download	0.405	g.13.1	Crambin-like
View	Download	0.374	a.4.11	RNA polymerase subunit RPB10
View	Download	0.350	g.13.1	Crambin-like
View	Download	0.332	d.40.1	CI-2 family of serine protease inhibitors
View	Download	0.300	a.126.1	Serum albumin-like
View	Download	0.297	d.40.1	CI-2 family of serine protease inhibitors
View	Download	0.294	a.60.2	RuvA domain 2-like
View	Download	0.290	a.28.3	Retrovirus capsid protein C-terminal domain
View	Download	0.289	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits