YRC Public Data Repository - Protein Structure Prediction

Protein:	HUT1
Organism:	Saccharomyces cerevisiae
Length:	339 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HUT1.

Description	E-value	Query Range	Subject Range
PPT2_ORYSJ - Phosphoenolpyruvate/phosphate translocator 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT2 ...	1.0E-40	[3..336]	[102..406]
gi\|9295273 - gi\|9295273\|gb\|AAF86906.1\|AF223358_1 triose phosphate/phosphate translocator precursor [Mesembryanthe...	4.0E-40	[6..338]	[100..401]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	6.0E-40	[3..335]	[85..388]
gi\|125563126 - gi\|125563126\|gb\|EAZ08506.1\| hypothetical protein OsI_30778 [Oryza sativa Indica Group] PPT1_ORYSJ - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT1 ... gi\|13991929 - gi\|13991929\|gb\|AAK51561.1\|AF372833_1 phosphoenolpyruvate/phosphate translocator [Oryza sativa]	2.0E-39	[3..335]	[103..406]
CPT1_BRAOL - (P52177) Triose phosphate/phosphate translocator, chloroplast precursor (CTPT) TPT1_BRAOB - Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=...	5.0E-39	[6..337]	[103..403]
TPT_SOLTU - Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1	1.0E-38	[5..338]	[109..411]
TPT_ARATH - Triose phosphate/phosphate translocator TPT, chloroplastic OS=Arabidopsis thaliana GN=TPT PE=1 SV=1	2.0E-38	[6..337]	[106..406]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSTSSLVI CAIGIYATFL TWALVQEPLA TRTWPNSMGK FQFPNVISLI QASVAMMMGY  60
   61 LYLNWKKVEY PPR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.883	a.2.7	tRNA-binding arm

Predicted Domain #2

Region A:
Residues: [74-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMIKDHWKQL MLISFTQSSS GPLATTSLKH VDYLTYMLAK SCKMIPVLLV HLLLYRTPIA  60
   61 SQKKVVALLV SLGVTIFTIG GNDGKKLKRS FNESGNDNKL QGFGLLFSSL FLDGLTNATQ 120
  121 DKLLKANKAK EKGKQTLITG AHLMFTLNLF VILWNILYFI VIDCKQWDNA VSVLTMDPQV 180
  181 WGYLMLYSFC GAMGQCFIFY TLEQFGSLVL IMITVTRKMV SMILSIIVFG KSVRFQQWVG 240
  241 MFIVFGGITW EALNKKKANI PKAKSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [163-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFNESGNDNK LQGFGLLFSS LFLDGLTNAT QDKLLKANKA KEKGKQTLIT GAHLMFTLNL  60
   61 FVILWNILYF IVIDCKQWDN AVSVLTMDPQ VWGYLMLYSF CGAMGQCFIF YTLEQFGSLV 120
  121 LIMITVTRKM VSMILSIIVF GKSVRFQQWV GMFIVFGGIT WEALNKKKAN IPKAKSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits