YRC Public Data Repository - Protein Structure Prediction

Protein:	RVB2
Organism:	Saccharomyces cerevisiae
Length:	471 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RVB2.

Description	E-value	Query Range	Subject Range
gi\|207340744 - gi\|207340744\|gb\|EDZ68998.1\| YPL235Wp-like protein [Saccharomyces cerevisiae AWRI1631] RUVB2_YEAST - RuvB-like protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RVB2 PE=1 SV=1 RVB2 - Essential protein involved in transcription regulation; component of chromatin remodeling complexes;... gi\|190407729 - gi\|190407729\|gb\|EDV10994.1\| transcriptional regulator [Saccharomyces cerevisiae RM11-1a] gi\|151942566 - gi\|151942566\|gb\|EDN60912.1\| transcriptional regulator [Saccharomyces cerevisiae YJM789]	0.0	[1..471]	[1..471]
RUVB2_XENLA - RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1	0.0	[2..451]	[3..453]
gi\|220953558, gi... - gi\|220953558\|gb\|ACL89322.1\| rept-PA [synthetic construct], gi\|220943516\|gb\|ACL84301.1\| rept-PA [synt... rept-PA, FBpp030... - The gene reptin is referred to in FlyBase by the symbol Dmel\rept (CG9750, FBgn0040075). It is a pro... gi\|195352331, gi... - gi\|195352331\|ref\|XP_002042666.1\| GM15014 [Drosophila sechellia], gi\|194124550\|gb\|EDW46593.1\| GM15014... gi\|194197468, gi... - gi\|195591461\|ref\|XP_002085459.1\| GD14791 [Drosophila simulans], gi\|194197468\|gb\|EDX11044.1\| GD14791 ...	0.0	[3..458]	[1..457]
RUVBL2 - RuvB-like 2 (E. coli) ENSMMUG000000039... - null, null gi\|208967366, gi... - gi\|208967366\|dbj\|BAG73697.1\| RuvB-like 2 [synthetic construct], gi\|123995785\|gb\|ABM85494.1\| RuvB-lik... gi\|114678319 - gi\|114678319\|ref\|XP_001172052.1\| PREDICTED: RuvB-like 2 isoform 4 [Pan troglodytes]	0.0	[3..451]	[5..454]
gi\|34856079, gi\|... - ref\|XP_214951.2\| similar to DNA helicase [Rattus norvegicus], gi\|149055923\|gb\|EDM07354.1\| RuvB-like... RUVB2_MOUSE - RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=1 SV=3 gi\|149757860 - gi\|149757860\|ref\|XP_001490235.1\| PREDICTED: similar to DNA helicase isoform 1 [Equus caballus]	0.0	[4..451]	[6..454]
RUVB2_SCHPO - RuvB-like helicase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rvb2 PE=1 SV=1 SPBC83.08 - AAA family ATPase Rvb2	0.0	[13..468]	[10..463]
gi\|15240788, gi\|... - gi\|9757884\|dbj\|BAB08471.1\| RuvB DNA helicase-like protein [Arabidopsis thaliana], gi\|22136550\|gb\|AAM...	0.0	[3..469]	[1..469]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQTSDPNE TSDLKSLSLI AAHSHITGLG LDENLQPRPT SEGMVGQLQA RRAAGVILKM  60
   61 VQNGTIAGRA VLVAGPPSTG KTALAMGVSQ SLGKDVPFTA IAGSEIFSLE LSKTEALTQA 120
  121 FRKSIGIKIK EETELIEGEV VEIQIDRSIT GGHKQGKLTI KTTDMETIYE LGNKMIDGLT 180
  181 KEKVLAGDVI SIDKASGKIT KLGRSFARSR DYDAMGADTR FVQC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.522879
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [225-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEGELQKRKT VVHTVSLHEI DVINSRTQGF LALFTGDTGE IRSEVRDQIN TKVAEWKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.522879
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [283-471]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGKAEIVPGV LFIDEVHMLD IECFSFINRA LEDEFAPIVM MATNRGVSKT RGTNYKSPHG  60
   61 LPLDLLDRSI IITTKSYNEQ EIKTILSIRA QEEEVELSSD ALDLLTKTGV ETSLRYSSNL 120
  121 ISVAQQIAMK RKNNTVEVED VKRAYLLFLD SARSVKYVQE NESQYIDDQG NVQISIAKSA 180
  181 DPDAMDTTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.09691
Match:	1jr3A_
Description:	gamma subunit; gamma subunit of DNA polymerase III, N-domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits