YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YPL229W
Organism: Saccharomyces cerevisiae
Length: 206 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL229W.

Description E-value Query
Range
Subject
Range
YP229_YEAST - Uncharacterized protein YPL229W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL229W ...
YPL229W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...
2.0E-69 [1..206] [1..206]

Back

Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPYNTPPNI QEPMNFASSN PFGIIPDALS FQNFKYDRLQ QQQQQQQQQQ QNRTASSLQQ  60
   61 PQQQQPISPP LFLVGAGTSE NSNLNKNANT STIPPLLFSR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.343 a.118.8 TPR-like
View Download 0.372 a.64.1 Saposin
View Download 0.325 f.28.1 Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
View Download 0.271 a.46.1 Methionine synthase domain
View Download 0.208 a.51.1 Cytochrome c oxidase subunit h
View Download 0.372 a.64.1 Saposin
View Download 0.343 a.118.8 TPR-like
View Download 0.325 f.28.1 Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
View Download 0.300 a.64.1 Saposin
View Download 0.271 a.46.1 Methionine synthase domain

Predicted Domain #2
Region A:
Residues: [101-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSQHYVVPDI DHSSIIYKNN ICKSFKDDLF FCPRSLLSLE EQQACEKMDR LTAEQMSLYH  60
   61 QNTQSSSNPG SMSSSPPNSA SSIFNSRPKF NPYTSQSFNP LESVQE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.459 N/A N/A a.13.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View Download 0.326 N/A N/A a.37.1 A DNA-binding domain in eukaryotic transcription factors
View Download 0.326 N/A N/A a.25.1 Ferritin-like
View Download 0.322 N/A N/A b.40.4 Nucleic acid-binding proteins
View Download 0.296 N/A N/A a.63.1 Apolipophorin-III


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle