YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL225W
Organism:	Saccharomyces cerevisiae
Length:	146 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL225W.

Description	E-value	Query Range	Subject Range
gi\|74179171 - gi\|74179171\|dbj\|BAB25165.3\| unnamed protein product [Mus musculus]	229.0	[0..3]	[139..23]
CXorf26 - chromosome X open reading frame 26	227.0	[0..3]	[139..23]
gi\|62667094, gi\|... - gi\|62667094\|ref\|XP_343809.2\| PREDICTED: similar to CG7519-PA [Rattus norvegicus], gi\|157818635\|ref\|N...	227.0	[0..3]	[139..23]
gi\|74007756 - gi\|74007756\|ref\|XP_549089.2\| PREDICTED: similar to CG7519-PA isoform 1 [Canis familiaris]	226.0	[0..3]	[139..23]
gi\|109131289 - gi\|109131289\|ref\|XP_001098545.1\| PREDICTED: similar to CG7519-PA [Macaca mulatta]	226.0	[0..3]	[139..23]
gi\|92097591 - gi\|92097591\|gb\|AAI14904.1\| C11HXORF26 protein [Bos taurus]	225.0	[0..3]	[139..23]
gi\|44984279 - gi\|44984279\|gb\|AAS53245.1\| AFL129Wp [Ashbya gossypii ATCC 10895] gi\|44984279, gi\|... - gi\|45198392\|ref\|NP_985421.1\| AFL129Wp [Ashbya gossypii ATCC 10895], gi\|44984279\|gb\|AAS53245.1\| AFL12...	215.0	[0..1]	[145..1]
gi\|50305923, gi\|... - gi\|50305923\|ref\|XP_452922.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642055\|emb\|CAH0177... gi\|49642055 - gi\|49642055\|emb\|CAH01773.1\| KLLA0C16159p [Kluyveromyces lactis]	215.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFNAETAD NLEDIEKQFA VVAVEQAETY WKLLTSVPGS KLRLTKFDDE IYENFMERFP  60
   61 EYKDVERVKK FTEEELKTKE AKERWRKFFT IFEKKIEDYN FGTLLRTDAS AEYGQFTTCF 120
  121 VVRLQFYAFE IARNKHGLND WIVGQK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	107.853872
Match:	PF05516.2
Description:	No description for PF05516.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.609	N/A	N/A	g.53.1	TAZ domain
View	Download	0.514	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.457	N/A	N/A	a.29.5	alpha-ketoacid dehydrogenase kinase, N-terminal domain
View	Download	0.455	N/A	N/A	a.41.1	Domain of poly(ADP-ribose) polymerase
View	Download	0.447	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits