YRC Public Data Repository - Protein Structure Prediction

Protein:	FMP40
Organism:	Saccharomyces cerevisiae
Length:	688 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMP40.

Description	E-value	Query Range	Subject Range
FMP40_YEAST - UPF0061 protein FMP40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP40 PE=1 SV=1 FMP40 - Putative protein of unknown function; proposed to be involved in responding to environmental stresse... gi\|151942579 - gi\|151942579\|gb\|EDN60925.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190407741 - gi\|190407741\|gb\|EDV11006.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	0.0	[1..688]	[1..688]
YE35_SCHPO - UPF0061 protein C20G4.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20G4.05c PE=... SPAC20G4.05c - UPF0061 family protein	0.0	[20..688]	[5..568]
gi\|16416091 - gi\|16416091\|emb\|CAB91237.2\| conserved hypothetical protein [Neurospora crassa] gi\|164428165, gi... - gi\|164428165\|ref\|XP_957181.2\| hypothetical protein NCU01758 [Neurospora crassa OR74A], gi\|157072037\|...	0.0	[20..688]	[22..647]
Y909_VIBPA - UPF0061 protein VP0909 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP0909 PE=... Y909_VIBPA - UPF0061 protein VP0909 OS=Vibrio parahaemolyticus GN=VP0909 PE=3 SV=1	0.0	[49..688]	[6..489]
Y9953_RHOBA, Y99... - (Q7UKT5) Hypothetical UPF0061 protein RB9953, UPF0061 protein RB9953 OS=Rhodopirellula baltica GN=RB... Y9953_RHOBA - UPF0061 protein RB9953 OS=Rhodopirellula baltica GN=RB9953 PE=3 SV=1 Y9953_RHOBA - UPF0061 protein RB9953 OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) GN=RB9953 PE...	0.0	[22..688]	[4..540]
Y982_RHIME - UPF0061 protein R00982 OS=Rhizobium meliloti (strain 1021) GN=R00982 PE=3 SV=1 Y982_RHIME - UPF0061 protein R00982 OS=Rhizobium meliloti GN=R00982 PE=3 SV=1	0.0	[65..634]	[18..461]
SELO_MOUSE - Selenoprotein O - Mus musculus (Mouse)	0.0	[47..685]	[66..666]
gi\|24986851, gi\|... - gi\|26991744\|ref\|NP_747169.1\| hypothetical protein PP_5068 [Pseudomonas putida KT2440], gi\|24986851\|g...	0.0	[5..688]	[18..540]

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Predicted Domain #1

Region A:
Residues: [1-688]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEKRTIIKA LKNSAASHFI KKLTADTSLS SIQEAINVVQ QYNATDPVRL KLFHTPRMVS  60
   61 QGAHFAFCLP TKKPHYKPLL LSQNALDEFN LVQDQDLEKI LSGEKVYYSD SIFPYSTVYS 120
  121 GFQFGSFAAQ LGDGRVVNLF DLKDKCSGQW QTFQLKGAGM TPFSRFADGK AVLRSSIREF 180
  181 IMSEALHSIG IPSTRAMQLT LLPGTKAQRR NQEPCAVVCR FAPSWIRLGN FNLFRWRHDL 240
  241 KGLIQLSDYC IEELFAGGTQ FEGKPDFNIF KRDFFPDTET KIDEQVEKDE TEVSTMTGDN 300
  301 ISTLSKYDEF FRHVVSLNAN TVAHWQAYGF ANGVLNTDNT SIMGLTIDYG PFAFLDKFEP 360
  361 SFTPNHDDTA KRYSFANQPS IIWWNLQQFA KDLACLLGPE ARDLELLLKG ELNSVDDALE 420
  421 KTMIERVQKL VELSANEYKY VFTTRYAQIM SQRLGVDLDL EKCMSSTNLK DIEHAAEKAK 480
  481 EFCDVIVEPL LDILQATKVD YNNFFIHLQN YKGPFFIKDK SDTATLFGAF DEEYLGMFFN 540
  541 SKQLQQMAET EEAFAAGEKV FDANGELRLL NEKLQEIRNW TQDYLTLVPP TETAARASLA 600
  601 KKANPLFVPR SWVLEEVVDD LMYSQRDGLQ DPSSELDTSA LKKLYLMSVN PYDRTKWDVT 660
  661 LRPELETKWA DLSHQDDAKF MMQASCSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	1000.0
Match:	PF02696
Description:	Uncharacterized ACR, YdiU/UPF0061 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits