YRC Public Data Repository - Protein Structure Prediction

Protein:	OXR1
Organism:	Saccharomyces cerevisiae
Length:	273 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OXR1.

Description	E-value	Query Range	Subject Range
gi\|151942603 - gi\|151942603\|gb\|EDN60949.1\| oxidation resistance [Saccharomyces cerevisiae YJM789] gi\|190407765 - gi\|190407765\|gb\|EDV11030.1\| oxidation resistance protein 1 [Saccharomyces cerevisiae RM11-1a] OXR1_YEAST - Oxidation resistance protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OXR1 PE=1... OXR1 - Protein of unknown function required for normal levels of resistance to oxidative damage, null mutan...	8.0E-78	[1..273]	[1..273]
gi\|20531145, gi\|... - gi\|42476175\|ref\|NP_861447.2\| nuclear receptor coactivator 7 [Homo sapiens], gi\|20531145\|gb\|AAM27392....	1.0E-62	[4..270]	[727..939]
gi\|40254222, gi\|... - ref\|NP_766083.2\| RIKEN cDNA 9030406N13 [Mus musculus], gi\|34536597\|dbj\|BAC87660.1\| unnamed protein p...	1.0E-60	[4..270]	[619..833]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGVKDAIFK IKRSIAGTDS SDSTAYTTAS ESSPQLKDSH NPFRNKTTSE RTIVEEGSLP  60
   61 PVRLNGYLPS TKNKLLTPEM CDEIRTLMPT RIQLY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [96-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEWNLLYSLE QHGSSLHSLY SNVAPDSKEF RRVGYVLVIK DRKNGIFGAY SNEAFHPNEH  60
   61 RQYTGNGECF LWKLDKVPDV NISEKEESEQ EGKEGKEEGD KEERWRFSGY PYTGVNEFAI 120
  121 YCTSEFLSMG AGDGHYGLLC DDGLLHGVSN PCQTYGNEVL SKEGKKFSIV ALEVWRVG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits