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View Structure Prediction Details

Protein: RSA1
Organism: Saccharomyces cerevisiae
Length: 381 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSA1.

Description E-value Query
Range
Subject
Range
RSA1_YEAST - Ribosome assembly 1 protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA1 PE=1 SV...
gi|190407768 - gi|190407768|gb|EDV11033.1| ribosome assembly 1 protein [Saccharomyces cerevisiae RM11-1a]
gi|207340688 - gi|207340688|gb|EDZ68960.1| YPL193Wp-like protein [Saccharomyces cerevisiae AWRI1631]
RSA1 - Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; funct...
gi|151942606 - gi|151942606|gb|EDN60952.1| ribosome assembly [Saccharomyces cerevisiae YJM789]
0.0 [1..381] [1..381]

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Predicted Domain #1
Region A:
Residues: [1-381]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYNNFENSK GDGHSRLPKP TYSGTLSDGY DESKIKRQKT DSAFNAAYSP HMYPNSPYYE  60
   61 GSWNTGYTPQ LHHVAPHNQY FHPIQPSTQY NYTSPPNYTE NYIPPVHQNI SYAPALNLQK 120
  121 WPSSYCENTQ ALKNDKDYQT SISYEDVAIP TVKEIQLIEK NRGKDTFMNE ISPVPSSKDQ 180
  181 ASAEPTEIPR KDPELANSNA EDDHNNLGLE DDDRDEQLES EGLGKVVLVP GTSIALITDE 240
  241 DVKKWREERK KMWLLKISNN KQKHMQEMGI KEDELKSQPS IFKESRKEKQ FIQSIQNQVQ 300
  301 RGNPKIDLNL KLIQREFANE NSQLLDFIRE LGDVGLLEYE LSQQEKDVLF GSSEDNNKNH 360
  361 YKPNYKNRKP NLSRANFTRN K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle