YRC Public Data Repository - Protein Structure Prediction

Protein:	MF(ALPHA)1
Organism:	Saccharomyces cerevisiae
Length:	165 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MF(ALPHA)1.

Description	E-value	Query Range	Subject Range
MFAL1_YEAST - Mating factor alpha-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MF(ALPHA)1 PE=1 SV... MF(ALPHA)1 - Mating pheromone alpha-factor, made by alpha cells; interacts with mating type a cells to induce cel...	1.0E-79	[1..165]	[1..165]
MFA1_SACBA - Mating factor alpha OS=Saccharomyces bayanus PE=4 SV=1 MFA1_SACUV - Mating factor alpha OS=Saccharomyces uvarum PE=4 SV=1	5.0E-68	[1..144]	[1..144]
gi\|24940448, gi\|... - gi\|24940450\|emb\|CAD56324.1\| alpha-pheromone [Saccharomyces paradoxus], gi\|24940448\|emb\|CAD56323.1\| a...	6.0E-64	[1..165]	[1..177]
gi\|27948829 - gi\|27948829\|gb\|AAO25615.1\| mating pheromone alpha2 [Kluyveromyces delphensis]	1.0E-61	[1..165]	[1..168]
gi\|50288999, gi\|... - gi\|50288999\|ref\|XP_446929.1\| unnamed protein product [Candida glabrata], gi\|49526238\|emb\|CAG59862.1\|... gi\|49526238, gi\|... - gi\|49526238\|emb\|CAG59862.1\| unnamed protein product [Candida glabrata], gi\|27948823\|gb\|AAO25610.1\| m...	3.0E-49	[1..144]	[1..159]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFPSIFTAV LFAASSALAA PVNTTTEDET AQIPAEAVIG YLDLEGDFDV AVLPFSNSTN  60
   61 NGLLFINTTI ASIAAKEEGV SLDKREAEAW HWLQLKPGQP MYKREAEAEA WHWLQLKPGQ 120
  121 PMYKREADAE AWHWLQLKPG QPMYKREADA EAWHWLQLKP GQPMY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits