YRC Public Data Repository - Protein Structure Prediction

Protein:	UIP4
Organism:	Saccharomyces cerevisiae
Length:	304 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UIP4.

Description	E-value	Query Range	Subject Range
gi\|207340678 - gi\|207340678\|gb\|EDZ68955.1\| YPL186Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151942614 - gi\|151942614\|gb\|EDN60960.1\| Ulp1 interacting protein [Saccharomyces cerevisiae YJM789] UIP4 - Protein that interacts with Ulp1p, a Ubl (ubiquitin-like protein)-specific protease for Smt3p protei... UIP4_YEAST - ULP1-interacting protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UIP4 PE=1 SV=...	2.0E-39	[1..304]	[1..304]
MDN1_GIAIN - Midasin OS=Giardia intestinalis GN=MDN1 PE=3 SV=1	1.0E-38	[12..275]	[4053..4346]
GL50803_39312 - \| organism=Giardia_Assemblage_A_isolate_WB \| product=Midasin \| location=GLCHR02:40567-55074(+) \| len... ctg02_53\|39312\|M... - null gi\|157432603, gi... - gi\|71070869\|ref\|XP_768005.1\| hypothetical protein GLP_74_7403_21910 [Giardia lamblia ATCC 50803], gi...	1.0E-38	[12..275]	[4053..4346]
SPCC737.08 - midasin MDN1_SCHPO - Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdn1 PE=1 SV=1	3.0E-36	[6..274]	[3940..4221]
kis-PA - The gene kismet is referred to in FlyBase by the symbol Dmel\kis (CG3696, FBgn0086902). It is a prot...	1.0E-32	[6..302]	[1590..1900]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-27	[47..282]	[4292..4542]
gi\|124806619, gi... - gi\|23509061\|ref\|NP_701729.1\| hypothetical protein PFL1835w [Plasmodium falciparum 3D7], gi\|23496901\|...	3.0E-24	[10..280]	[886..1162]
gi\|23486147 - gi\|23486147\|gb\|EAA20734.1\| hypothetical protein [Plasmodium yoelii yoelii] gi\|83032731 - gi\|83032731\|ref\|XP_729169.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	3.0E-23	[5..258]	[92..347]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTIVFDHPA EDFPELKIAG EFTNWEGVPM KINTSSGKWE YKFDESSVTK HNDKDKVHFK  60
   61 FIDQNGNWFA DDEYPKEVDE HSNENNVATL NNEEDGGSAG EEKDEGDKTA HNTNENGSEL 120
  121 YYEGPETPTP SLKGNVTFPS PKTAISQDGS AFAKETTRKE RKYEHAPLNE VPVERDPKEE 180
  181 NKELSPNFSQ EQTENKQDKG LDNLSEGN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [209-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNDNTRVNED TDVTDTQESE HEINGSDTEN TDMSEQEEIQ KIDKPADQNA KSIVKEGDAN  60
   61 TEDYESVLKK LLGALGRFFG SWFSWLTTKM SSSEAS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits