YRC Public Data Repository - Protein Structure Prediction

Protein:	RTC6
Organism:	Saccharomyces cerevisiae
Length:	93 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTC6.

Description	E-value	Query Range	Subject Range
RM36_MOUSE - 39S ribosomal protein L36, mitochondrial OS=Mus musculus GN=Mrpl36 PE=3 SV=1	101.0	[0..2]	[92..17]
gi\|85093100 - gi\|85093100\|ref\|XP_959628.1\| hypothetical protein NCU06038 [Neurospora crassa OR74A] gi\|32410825, gi\|... - gi\|32410825\|ref\|XP_325893.1\| predicted protein [Neurospora crassa], gi\|28921073\|gb\|EAA30392.1\| predi...	100.0	[0..12]	[93..38]
gi\|220959306, gi... - gi\|220959306\|gb\|ACL92196.1\| mRpL36-PA [synthetic construct], gi\|220950322\|gb\|ACL87704.1\| mRpL36-PA [... mRpL36-PA - The gene mitochondrial ribosomal protein L36 is referred to in FlyBase by the symbol Dmel\mRpL36 (CG...	96.0	[0..2]	[90..24]
MRPL36 - mitochondrial ribosomal protein L36 ENSPTRT00000031035 - null	94.0	[0..3]	[92..14]
gi\|114577938 - gi\|114577938\|ref\|XP_517616.2\| PREDICTED: similar to putative BRCA1-interacting protein [Pan troglody...	88.0	[0..3]	[92..45]
RM36_RAT - 39S ribosomal protein L36, mitochondrial OS=Rattus norvegicus GN=Mrpl36 PE=3 SV=1	88.0	[0..5]	[92..16]
gi\|58387994, gi\|... - gi\|58387994\|ref\|XP_315957.2\| ENSANGP00000014147 [Anopheles gambiae str. PEST], gi\|55238739\|gb\|EAA116...	85.0	[0..2]	[90..23]
SPBC83.06c - mitochondrial ribosomal protein subunit L36 RM36_SCHPO - 54S ribosomal protein c83.06c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	84.0	[0..39]	[93..5]

Back

Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLQTLRLTM PRMFLHMKPS PITITRACTV PSLLSVAAPQ PALVAANRPL VFNRGFKVRT  60
   61 SVKKFCSDCY LVRRKGRVYI YCKSNKKHKQ RQG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.819	d.67.3	Ribosome recycling factor, RRF

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits