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View Structure Prediction Details

Protein: MRPL40
Organism: Saccharomyces cerevisiae
Length: 297 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL40.

Description E-value Query
Range
Subject
Range
gi|151942626 - gi|151942626|gb|EDN60972.1| YmL40 [Saccharomyces cerevisiae YJM789]
gi|207340664 - gi|207340664|gb|EDZ68946.1| YPL173Wp-like protein [Saccharomyces cerevisiae AWRI1631]
MRPL40 - Mitochondrial ribosomal protein of the large subunit
RM40_YEAST - 54S ribosomal protein L40, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
0.0 [1..297] [1..297]
gi|85081643 - gi|85081643|ref|XP_956762.1| hypothetical protein NCU01485 [Neurospora crassa OR74A]
gi|32414889, gi|... - gi|32414889|ref|XP_327924.1| predicted protein [Neurospora crassa], gi|28917838|gb|EAA27526.1| predi...
2.0E-88 [38..284] [108..364]

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Predicted Domain #1
Region A:
Residues: [1-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSYQHLSN VGSRVMKRLG NRPKNFLPHS EKFIKKSTPE FMKSDLKEVD EKTSFKSEKE  60
   61 WKFIPGDRVV VMSGASKGNI AVIKSFDKRT NSFILDENGP TKTVPVPKQF WLEGQTSHMI 120
  121 TIPVSILGKD LRLVADIDDE KT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 5.60206
Match: PF00467
Description: KOW motif

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [143-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGKTRTVAVR DVSFNGSYYD ADYKKVMPYR CVKGQPDLII PWPKPDPIDV QTNLATDPVI  60
   61 AREQTFWVDS VVRNPIPKKA IPSIRNPHSK YKRGTLTAKD IAKLVAPEMP LTEVRKSHLA 120
  121 EKKELAEREV PKLTEEDMEA IGARVFEFLE KQKRE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle