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View Structure Prediction Details

Protein: POC4
Organism: Saccharomyces cerevisiae
Length: 148 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POC4.

Description E-value Query
Range
Subject
Range
gi|45270160 - gi|45270160|gb|AAS56461.1| YPL144W [Saccharomyces cerevisiae]
291.0 [0..1] [148..1]
gi|49528767 - gi|49528767|emb|CAG62429.1| unnamed protein product [Candida glabrata]
gi|50294083, gi|... - gi|50294083|ref|XP_449453.1| hypothetical protein CAGL0M02453g [Candida glabrata CBS138], gi|4952876...
69.0 [0..35] [119..22]
gi|44981564, gi|... - gi|45185809|ref|NP_983525.1| ACR123Cp [Ashbya gossypii ATCC 10895], gi|44981564|gb|AAS51349.1| ACR12...
gi|44981564 - gi|44981564|gb|AAS51349.1| ACR123Cp [Ashbya gossypii ATCC 10895]
52.0 [0..4] [144..5]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVKTISRTI ESESGFLQPT LDVIATLPAD DRSKKIPISL VVGFKQEASL NSSSSLSCYY  60
   61 YAIPLMRDRH INLKSGGSNV VGIPLLDTKD DRIRDMARHM ATIISERFNR PCYVTWSSLP 120
  121 SEDPSMLVAN HLYILKKCLD LLKTELGE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.839 c.23.5 Flavoproteins


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle