YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RPL5
Organism: Saccharomyces cerevisiae
Length: 297 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL5.

Description E-value Query
Range
Subject
Range
gi|41350988, gi|... - gi|41350988|gb|AAH65687.1| Ribosomal protein L5a [Danio rerio], gi|41054305|ref|NP_956050.1| ribosom...
0.0 [1..297] [1..291]
RL5_CHICK - 60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2
0.0 [1..297] [1..291]
gi|148230833, gi... - gi|27503217|gb|AAH42258.1| Rpl5-b protein [Xenopus laevis], gi|148230833|ref|NP_001079437.1| similar...
0.0 [1..297] [1..291]
gi|15293873 - gi|15293873|gb|AAK95129.1|AF401557_1 ribosomal protein L5b [Ictalurus punctatus]
0.0 [1..297] [1..292]
gi|90075216 - gi|90075216|dbj|BAE87288.1| unnamed protein product [Macaca fascicularis]
RPL5 - ribosomal protein L5
CCDS741.1_1 - null
ENSPTRT00000001815 - null
0.0 [1..297] [1..291]

Back

Predicted Domain #1
Region A:
Residues: [1-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFQKDAKSS AYSSRFQTPF RRRREGKTDY YQRKRLVTQH KAKYNTPKYR LVVRFTNKDI  60
   61 ICQIISSTIT GDVVLAAAYS HELPRYGITH GLTNWAAAYA TGLLIARRTL QKLGLDETYK 120
  121 GVEEVEGEYE LTEAVEDGPR PFKVFLDIGL QRTTTGARVF GALKGASDGG LYVPHSENRF 180
  181 PGWDFETEEI DPELLRSYIF GGHVSQYMEE LADDDEERFS ELFKGYLADD IDADSLEDIY 240
  241 TSAHEAIRAD PAFKPTEKKF TKEQYAAESK KYRQTKLSKE ERAARVAAKI AALAGQQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 241.228787
Match: 1ffkK_
Description: Ribosomal protein L18 (L18p)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [227-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LADDIDADSL EDIYTSAHEA IRADPAFKPT EKKFTKEQYA AESKKYRQTK LSKEERAARV  60
   61 AAKIAALAGQ Q

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle