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View Structure Prediction Details

Protein: SPC29
Organism: Saccharomyces cerevisiae
Length: 253 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPC29.

Description E-value Query
Range
Subject
Range
SPC29 - Inner plaque spindle pole body (SPB) component, links the central plaque component Spc42p to the inn...
Spc29, YPL124W_W303 - SPC29 ORF Verified Inner plaque spindle pole body (SPB) component; links the central plaque componen...
SPC29_YEAS8 - Spindle pole component 29 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=SP...
SPC29_YEAS2 - Spindle pole component 29 OS=Saccharomyces cerevisiae (strain JAY291) GN=SPC29 PE=3 SV=1
SPC29_YEASV - Spindle pole component 29 OS=Saccharomyces cerevisiae (strain VIN 13) GN=SPC29 PE=3 SV=1
SPC29_YEAS1 - Spindle pole component 29 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SPC29 PE=3 SV=1
SPC29_YEAST - Spindle pole component 29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPC29 PE=1 SV=...
SPC29_YEAS6 - Spindle pole component 29 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=SPC29 PE=3 SV=1
SPC29_YEASL - Spindle pole component 29 OS=Saccharomyces cerevisiae (strain Lalvin QA23) GN=SPC29 PE=3 SV=1
0.0 [1..253] [1..253]

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Predicted Domain #1
Region A:
Residues: [1-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYSNFGNSA SKKFQDDTLN RVRKEHEEAL KKLREENFSS NTSELGNKKH YRAQERMSSP  60
   61 LHRLSPTGKS DDRKVKSPLD DKLRRQLREG NTRLPPPPFS SYGMPPTNRS NLDRIRRRTS 120
  121 SPVRTDKFAS QNVIDDQRLE IKYLERIVYD QGTVIDNLTS RITRLESFIL NSISDRGDKN 180
  181 FASLEHSRSF SGFPTNKTYG LQMGGLYEND MPYRRSSDNI NKEGAREDRS SQIHIENEST 240
  241 EDILKILSSS FHN

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Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle