YRC Public Data Repository - Protein Structure Prediction

Protein:	MRP51
Organism:	Saccharomyces cerevisiae
Length:	344 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRP51.

Description	E-value	Query Range	Subject Range
YHS3_LACK1 - Uncharacterized protein in HIS3 3'region (Fragment) OS=Lachancea kluyveri (strain ATCC 58438 / CBS 3... YHS3_SACKL, YHS3... - Uncharacterized protein in HIS3 3'region (Fragment) OS=Saccharomyces kluyveri PE=4 SV=1, Uncharacter...	477.0	[0..10]	[341..2]
gi\|6523572 - gi\|6523572\|emb\|CAB62292.1\| hypothetical protein [Zygosaccharomyces rouxii]	410.0	[0..69]	[341..1]
gi\|37931732 - gi\|37931732\|gb\|AAP69230.1\| small subunit ribosomal protein [Torulaspora delbrueckii]	393.0	[0..3]	[341..4]
gi\|49644260, gi\|... - gi\|50310209\|ref\|XP_455124.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644260\|emb\|CAG9783... gi\|49644260\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	281.0	[0..3]	[342..4]
gi\|49527318 - gi\|49527318\|emb\|CAG60958.1\| unnamed protein product [Candida glabrata] gi\|49527318, gi\|... - gi\|50291149\|ref\|XP_448007.1\| unnamed protein product [Candida glabrata], gi\|49527318\|emb\|CAG60958.1\|...	233.0	[0..1]	[344..1]
RT51_ASHGO - 37S ribosomal protein MRP51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC... RT51_ASHGO - 40S ribosomal protein MRP51, mitochondrial OS=Ashbya gossypii GN=MRP51 PE=3 SV=1	232.0	[0..3]	[341..6]
gi\|28923415, gi\|... - gi\|32413643\|ref\|XP_327301.1\| hypothetical protein [Neurospora crassa], gi\|28923415\|gb\|EAA32600.1\| hy... gi\|85104933 - gi\|85104933\|ref\|XP_961836.1\| hypothetical protein [Neurospora crassa OR74A]	215.0	[0..30]	[206..607]
MU178_SCHPO - Meiotically up-regulated gene 178 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=... mug178 - mitochondrial ribosomal protein subunit L51-b	155.0	[0..1]	[100..1]
orf19.185 - orf19.185 CGDID:CAL0003248 Assembly 19, Contig19-10044 (5622, 6728) CDS, translated using codon tabl... gi\|68491154, gi\|... - gi\|68491154\|ref\|XP_710613.1\| possible mitochondrial ribosomal large subunit protein MRP51p [Candida ...	154.0	[0..5]	[341..10]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLAELLGRS RIAQVANNHK PLTYTGKKFH PTHQIIETKP STLYRQEWGL KSAIPSKIKS  60
   61 RYLVYNDLDT LERITTFEPR GGTQWNRLRF QEMGVPIVSN I

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.266	N/A	N/A	d.42.1	POZ domain
View	Download	0.261	N/A	N/A	d.360.1	Description not found.
View	Download	0.224	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.213	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.207	N/A	N/A	d.58.7	RNA-binding domain, RBD

Predicted Domain #2

Region A:
Residues: [102-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRQNPFFKYI SRPEDESHAK LSLFKEMKGD TDISPAAMKK RLKKITALIR SFQDEFKEWL  60
   61 VENHPDELKL NSNKLEDYVV KFLNKKLETK TNKKFNTEII GTGGLSYSLP GKLKNSPNGV 120
  121 IQRTVVPGRI LNVVKENNDN KWLAAIGGFV ADVVFFQSPP SSFNSMGDFI RMKTFLFEIL 180
  181 EASMEKNGSV SMHARLLEPQ NDKTREFFNK RPIYKPLTSR RARRPSVGNI QEANNLLNII 240
  241 KGN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits