YRC Public Data Repository - Protein Structure Prediction

Protein:	IDI1
Organism:	Saccharomyces cerevisiae
Length:	288 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IDI1.

Description	E-value	Query Range	Subject Range
gi\|151942681 - gi\|151942681\|gb\|EDN61027.1\| isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP isomera... gi\|207340592 - gi\|207340592\|gb\|EDZ68894.1\| YPL117Cp-like protein [Saccharomyces cerevisiae AWRI1631] IDI1 - Isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP isomerase), catalyzes an essential ... IDI1_YEAST - Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...	2.0E-83	[1..288]	[1..288]
gi\|13603406 - gi\|13603406\|dbj\|BAB40973.1\| isopentenyl diphosphate isomerase 1 [Nicotiana tabacum]	2.0E-73	[4..287]	[2..289]
IDI2_CLAXA - Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1	3.0E-71	[4..287]	[11..290]
gi\|6856554 - gi\|6856554\|gb\|AAF29975.1\|AF188062_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase...	2.0E-70	[5..287]	[1..279]
gi\|6856550 - gi\|6856550\|gb\|AAF29973.1\|AF188060_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase...	2.0E-70	[1..287]	[1..294]
IDI1_ARATH - Isopentenyl-diphosphate Delta-isomerase I, chloroplastic OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3	7.0E-70	[2..287]	[3..291]
IDI1_MESAU - Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1	1.0E-69	[54..287]	[1..227]
gi\|7110585 - gi\|7110585\|gb\|AAF36996.1\|AF236092_1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase ...	3.0E-69	[3..287]	[4..281]
IDI2_CLABR - Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2	2.0E-68	[1..287]	[3..286]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTADNNSMPH GAVSSYAKLV QNQTPEDILE EFPEIIPLQQ RPNTRSSETS NDESGETCFS  60
   61 GHDEEQIKLM NENCIVLDWD DNAIGAGTKK VCHLMENIEK GLLHRAFSVF IFNEQGELLL 120
  121 QQRATEKITF PDLWTNTCCS HPLCIDDELG LKGKLDDKIK GAITAAVRKL DHELGIPEDE 180
  181 TKTRGKFHFL NRIHYMAPSN EPWGEHEIDY ILFYKINAKE NLTVNPNVNE VRDFKWVSPN 240
  241 DLKTMFADPS YKFTPWFKII CENYLFNWWE QLDDLSEVEN DRQIHRML

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.39794
Match:	1nfsA_
Description:	Isopentenyl diphosphate isomerase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits