| Protein: | SSU1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 458 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSU1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..458] | [1..458] |
|
|
1.0E-63 | [8..425] | [185..546] |
|
|
4.0E-62 | [9..424] | [30..389] |
|
|
3.0E-54 | [8..420] | [24..378] |
|
|
5.0E-54 | [8..420] | [24..378] |
|
|
8.0E-54 | [10..332] | [255..529] |
|
|
8.0E-54 | [10..346] | [262..550] |
|
Region A: Residues: [1-339] |
1 11 21 31 41 51
| | | | | |
1 MVANWVLALT RQFDPFMFMM VMGVGISSNI LYSFPYPARW LRICSYIMFA IACLIFIAVQ 60
61 ALQILHLIVY IKEKSFREYF NDFFRNMKHN LFWGTYPMGL VTIINFLGAL SKANTTKSPT 120
121 NARNLMIFVY VLWWYDLAVC LVIAWGISFL IWHDYYPLEG IGNYPSYNIK MASENMKSVL 180
181 LLDIIPLVVV ASSCGTFTMS EIFFHAFNRN IQLITLVICA LTWLHAIIFV FILIAIYFWS 240
241 LYINKIPPMT QVFTLFLLLG PMGQGSFGVL LLTDNIKKYA GKYYPTDNIT REQEILTIAV 300
301 PWCFKILGMV SAMALLAMGY FFTVISVVSI LSYYNKKEI
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [340-458] |
1 11 21 31 41 51
| | | | | |
1 ENETGKVKRV YTFHKGFWGM TFPMGTMSLG NEELYVQYNQ YVPLYAFRVL GTIYGGVCVC 60
61 WSILCLLCTL HEYSKKMLHA ARKSSLFSES GTEKTTVSPY NSIESVEESN SALDFTRLA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.519 | a.1.1 | Globin-like |
| View | Download | 0.641 | a.7.1 | Spectrin repeat |
| View | Download | 0.680 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.584 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.589 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.511 | a.7.7 | BAG domain |
| View | Download | 0.502 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.480 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.454 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.425 | a.24.4 | Hemerythrin |
| View | Download | 0.424 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.388 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.387 | a.47.2 | t-snare proteins |
| View | Download | 0.382 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.374 | a.130.1 | Chorismate mutase II |
| View | Download | 0.371 | c.55.3 | Ribonuclease H-like |
| View | Download | 0.367 | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.365 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.358 | a.3.1 | Cytochrome c |
| View | Download | 0.357 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.356 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.354 | d.15.1 | Ubiquitin-like |
| View | Download | 0.351 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.348 | a.22.1 | Histone-fold |
| View | Download | 0.346 | a.24.3 | Cytochromes |
| View | Download | 0.346 | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.344 | d.110.4 | SNARE-like |
| View | Download | 0.342 | a.1.1 | Globin-like |
| View | Download | 0.339 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.331 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.330 | a.141.1 | Frizzled cystein-rich domain |
| View | Download | 0.320 | a.77.1 | DEATH domain |
| View | Download | 0.318 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.313 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.310 | a.26.1 | 4-helical cytokines |
| View | Download | 0.309 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.306 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.306 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.305 | a.118.1 | ARM repeat |
| View | Download | 0.291 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.284 | a.19.1 | Fertilization protein |
| View | Download | 0.269 | a.29.2 | Bromodomain |
| View | Download | 0.266 | a.39.1 | EF-hand |
| View | Download | 0.266 | a.63.1 | Apolipophorin-III |
| View | Download | 0.265 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.263 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.261 | d.58.13 | Anticodon-binding domain of PheRS |
| View | Download | 0.260 | a.39.1 | EF-hand |
| View | Download | 0.248 | a.26.1 | 4-helical cytokines |
| View | Download | 0.248 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.244 | b.55.1 | PH domain-like |
| View | Download | 0.241 | d.184.1 | Non-globular alpha+beta subunits of globular proteins |
| View | Download | 0.239 | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.238 | b.24.1 | Hyaluronate lyase-like, C-terminal domain |
| View | Download | 0.238 | a.77.1 | DEATH domain |
| View | Download | 0.237 | a.131.1 | Peridinin-chlorophyll protein |
| View | Download | 0.237 | c.23.1 | CheY-like |
| View | Download | 0.235 | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.234 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.228 | a.1.1 | Globin-like |
| View | Download | 0.226 | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.220 | d.15.1 | Ubiquitin-like |
| View | Download | 0.217 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.214 | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.214 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.214 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.214 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.211 | a.22.1 | Histone-fold |
| View | Download | 0.210 | d.67.2 | Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |
| View | Download | 0.206 | a.4.1 | Homeodomain-like |
| View | Download | 0.204 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.201 | d.15.11 | Doublecortin (DC) |
|
Region A: Residues: [344-458] |
1 11 21 31 41 51
| | | | | |
1 GKVKRVYTFH KGFWGMTFPM GTMSLGNEEL YVQYNQYVPL YAFRVLGTIY GGVCVCWSIL 60
61 CLLCTLHEYS KKMLHAARKS SLFSESGTEK TTVSPYNSIE SVEESNSALD FTRLA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.680 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.641 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.589 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.584 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.557 | N/A | N/A | a.47.2 | t-snare proteins |
