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View Structure Prediction Details

Protein: SSU1
Organism: Saccharomyces cerevisiae
Length: 458 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSU1.

Description E-value Query
Range
Subject
Range
SSU1 - Plasma membrane sulfite pump involved in sulfite metabolism and required for efficient sulfite efflu...
SSU1_YEAST - Sulfite efflux pump SSU1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSU1 PE=1 SV=5
0.0 [1..458] [1..458]
gi|85090331 - gi|85090331|ref|XP_958365.1| hypothetical protein [Neurospora crassa OR74A]
gi|28919722, gi|... - gi|32414647|ref|XP_327803.1| hypothetical protein [Neurospora crassa], gi|28919722|gb|EAA29129.1| hy...
1.0E-63 [8..425] [185..546]
MAE1_SCHPO - Malic acid transport protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mae1 PE=1 SV=...
mae1 - malic acid transport protein Mae1
4.0E-62 [9..424] [30..389]
gi|13926140|gb|A... - unknown [Pseudomonas syringae pv. maculicola], hypothetical protein pFKN_p18 [Pseudomonas syringae p...
gi|13926140, gi|... - gi|14010723|ref|NP_114209.1| hypothetical protein pFKN_p18 [Pseudomonas syringae pv. maculicola], gi...
3.0E-54 [8..420] [24..378]
tr|Q87WD8|Q87WD8... - C4-dicarboxylate transporter/malic acid transport protein OS=Pseudomonas syringae pv. tomato (strain...
gi|28854997, gi|... - gi|28871745|ref|NP_794364.1| C4-dicarboxylate transporter/malic acid transport protein [Pseudomonas ...
5.0E-54 [8..420] [24..378]
SLAH3_ARATH - S-type anion channel SLAH3 OS=Arabidopsis thaliana GN=SLAH3 PE=1 SV=1
8.0E-54 [10..332] [255..529]
gi|125526052 - gi|125526052|gb|EAY74166.1| hypothetical protein OsI_02047 [Oryza sativa Indica Group]
gi|21952874, gi|... - gi|34914992|ref|NP_918843.1| OSJNBb0093M23.16 [Oryza sativa (japonica cultivar-group)], gi|21952874|...
8.0E-54 [10..346] [262..550]

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Predicted Domain #1
Region A:
Residues: [1-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVANWVLALT RQFDPFMFMM VMGVGISSNI LYSFPYPARW LRICSYIMFA IACLIFIAVQ  60
   61 ALQILHLIVY IKEKSFREYF NDFFRNMKHN LFWGTYPMGL VTIINFLGAL SKANTTKSPT 120
  121 NARNLMIFVY VLWWYDLAVC LVIAWGISFL IWHDYYPLEG IGNYPSYNIK MASENMKSVL 180
  181 LLDIIPLVVV ASSCGTFTMS EIFFHAFNRN IQLITLVICA LTWLHAIIFV FILIAIYFWS 240
  241 LYINKIPPMT QVFTLFLLLG PMGQGSFGVL LLTDNIKKYA GKYYPTDNIT REQEILTIAV 300
  301 PWCFKILGMV SAMALLAMGY FFTVISVVSI LSYYNKKEI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [340-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENETGKVKRV YTFHKGFWGM TFPMGTMSLG NEELYVQYNQ YVPLYAFRVL GTIYGGVCVC  60
   61 WSILCLLCTL HEYSKKMLHA ARKSSLFSES GTEKTTVSPY NSIESVEESN SALDFTRLA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [344-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKVKRVYTFH KGFWGMTFPM GTMSLGNEEL YVQYNQYVPL YAFRVLGTIY GGVCVCWSIL  60
   61 CLLCTLHEYS KKMLHAARKS SLFSESGTEK TTVSPYNSIE SVEESNSALD FTRLA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle