Protein: | SSU1 |
Organism: | Saccharomyces cerevisiae |
Length: | 458 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSU1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..458] | [1..458] |
|
1.0E-63 | [8..425] | [185..546] |
|
4.0E-62 | [9..424] | [30..389] |
|
3.0E-54 | [8..420] | [24..378] |
|
5.0E-54 | [8..420] | [24..378] |
|
8.0E-54 | [10..332] | [255..529] |
|
8.0E-54 | [10..346] | [262..550] |
Region A: Residues: [1-339] |
1 11 21 31 41 51 | | | | | | 1 MVANWVLALT RQFDPFMFMM VMGVGISSNI LYSFPYPARW LRICSYIMFA IACLIFIAVQ 60 61 ALQILHLIVY IKEKSFREYF NDFFRNMKHN LFWGTYPMGL VTIINFLGAL SKANTTKSPT 120 121 NARNLMIFVY VLWWYDLAVC LVIAWGISFL IWHDYYPLEG IGNYPSYNIK MASENMKSVL 180 181 LLDIIPLVVV ASSCGTFTMS EIFFHAFNRN IQLITLVICA LTWLHAIIFV FILIAIYFWS 240 241 LYINKIPPMT QVFTLFLLLG PMGQGSFGVL LLTDNIKKYA GKYYPTDNIT REQEILTIAV 300 301 PWCFKILGMV SAMALLAMGY FFTVISVVSI LSYYNKKEI |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [340-458] |
1 11 21 31 41 51 | | | | | | 1 ENETGKVKRV YTFHKGFWGM TFPMGTMSLG NEELYVQYNQ YVPLYAFRVL GTIYGGVCVC 60 61 WSILCLLCTL HEYSKKMLHA ARKSSLFSES GTEKTTVSPY NSIESVEESN SALDFTRLA |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [344-458] |
1 11 21 31 41 51 | | | | | | 1 GKVKRVYTFH KGFWGMTFPM GTMSLGNEEL YVQYNQYVPL YAFRVLGTIY GGVCVCWSIL 60 61 CLLCTLHEYS KKMLHAARKS SLFSESGTEK TTVSPYNSIE SVEESNSALD FTRLA |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.