YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS9A
Organism:	Saccharomyces cerevisiae
Length:	197 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS9A.

Description	E-value	Query Range	Subject Range
gi\|194196289, gi... - gi\|195589072\|ref\|XP_002084280.1\| GD12912 [Drosophila simulans], gi\|194196289\|gb\|EDX09865.1\| GD12912 ... FBpp0309532, RpS... - The gene Ribosomal protein S9 is referred to in FlyBase by the symbol Dmel\RpS9 (CG3395, FBgn0010408... gi\|194118835, gi... - gi\|195326350\|ref\|XP_002029892.1\| GM24860 [Drosophila sechellia], gi\|194118835\|gb\|EDW40878.1\| GM24860... gi\|194179392, gi... - gi\|195490797\|ref\|XP_002093291.1\| RpS9 [Drosophila yakuba], gi\|194179392\|gb\|EDW93003.1\| RpS9 [Drosoph... gi\|194867971, gi... - gi\|194867971\|ref\|XP_001972186.1\| GG14025 [Drosophila erecta], gi\|190653969\|gb\|EDV51212.1\| GG14025 [D...	7.0E-71	[3..181]	[5..183]
gi\|57143, gi\|135... - gi\|57143\|emb\|CAA47013.1\| ribosomal protein S9 [Rattus norvegicus], gi\|13592067\|ref\|NP_112370.1\| ribo...	1.0E-69	[9..193]	[10..194]
gi\|149722554 - gi\|149722554\|ref\|XP_001488074.1\| PREDICTED: similar to ribosomal protein S9 [Equus caballus] gi\|167427248 - gi\|167427248\|gb\|ABZ80228.1\| ribosomal protein S9 (predicted) [Callithrix jacchus] gi\|53734323 - gb\|AAH83997.1\| Unknown (protein for MGC:98133) [Xenopus laevis] gi\|109126024 - gi\|109126024\|ref\|XP_001082895.1\| PREDICTED: similar to 40S ribosomal protein S9 [Macaca mulatta] gi\|114679016, gi... - gi\|55649873\|ref\|XP_512888.1\| PREDICTED: similar to ribosomal protein S9-like [Pan troglodytes], gi\|1... gi\|217418300 - gi\|217418300\|gb\|ACK44303.1\| ribosomal protein S9 (predicted) [Oryctolagus cuniculus] RS9_RAT - 40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4 gi\|197215709 - gi\|197215709\|gb\|ACH53097.1\| ribosomal protein S9 (predicted) [Otolemur garnettii] gi\|190576593 - gi\|190576593\|gb\|ACE79082.1\| ribosomal protein S9 (predicted) [Sorex araneus] gi\|229368769 - gi\|229368769\|gb\|ACQ63049.1\| ribosomal protein S9 (predicted) [Dasypus novemcinctus] CCDS12884.1_1 - null RPS9 - ribosomal protein S9 tr\|M3WJZ7\|M3WJZ7... - Ribosomal protein S9 OS=Felis catus GN=RPS9 PE=3 SV=1 RS9_PAPAN - 40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1 RS9_MOUSE - 40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=1 SV=3 gi\|184185529 - gi\|184185529\|gb\|ACC68931.1\| ribosomal protein S9 (predicted) [Rhinolophus ferrumequinum] RS9_BOVIN - 40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1 gi\|73947567 - gi\|73947567\|ref\|XP_533590.2\| PREDICTED: similar to 40S ribosomal protein S9 [Canis familiaris] gi\|123995415, gi... - gi\|60656367\|gb\|AAX32747.1\| ribosomal protein S9 [synthetic construct], gi\|208967336\|dbj\|BAG73682.1\| ...	1.0E-69	[9..193]	[10..194]
gi\|27735416, gi\|... - gi\|27735416\|gb\|AAH41242.1\| Rps9-prov protein [Xenopus laevis], gi\|148232254\|ref\|NP_001080124.1\| ribo...	2.0E-69	[9..193]	[10..194]
gi\|15294029 - gi\|15294029\|gb\|AAK95191.1\|AF402817_1 40S ribosomal protein S9 [Ictalurus punctatus]	6.0E-69	[9..179]	[10..180]
gi\|21594169 - gi\|21594169\|gb\|AAH31746.1\| Ribosomal protein S9 [Mus musculus]	6.0E-68	[9..193]	[10..194]
RS91_ARATH - 40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1	9.0E-68	[5..184]	[7..186]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	9.0E-68	[9..193]	[10..194]
RS9A_YEAST - 40S ribosomal protein S9-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS9A PE=1 SV... RPS9A - Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Bp and has similarit... gi\|151942716 - gi\|151942716\|gb\|EDN61062.1\| ribosomal protein S9A [Saccharomyces cerevisiae YJM789]	2.0E-67	[1..185]	[1..185]
gi\|83286205 - gi\|83286205\|ref\|XP_730059.1\| ribosomal protein S4 [Plasmodium yoelii yoelii str. 17XNL] gi\|23489625 - gi\|23489625\|gb\|EAA21624.1\| ribosomal protein S4, putative [Plasmodium yoelii yoelii]	3.0E-67	[1..179]	[1..179]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRAPRTYSK TYSTPKRPYE SSRLDAELKL AGEFGLKNKK EIYRISFQLS KIRRAARDLL  60
   61 TRDEKDPKRL FEGNALIRRL VRVGVLSEDK KKLDYVLALK VEDFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.522879
Match:	1c05A_
Description:	Ribosomal protein S4
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [106-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERRLQTQVYK LGLAKSVHHA RVLITQRHIA VGKQIVNIPS FMVRLDSEKH IDFAPTSPFG  60
   61 GARPGRVARR NAARKAEASG EAADEADEAD EE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.522879
Match:	1c05A_
Description:	Ribosomal protein S4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits