YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL068C
Organism:	Saccharomyces cerevisiae
Length:	293 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL068C.

Description	E-value	Query Range	Subject Range
gi\|207340527 - gi\|207340527\|gb\|EDZ68852.1\| YPL068Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407884 - gi\|190407884\|gb\|EDV11149.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YP068_YEAST - Uncharacterized protein YPL068C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL068C ... gi\|151942727 - gi\|151942727\|gb\|EDN61073.1\| conserved protein [Saccharomyces cerevisiae YJM789] YPL068C - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus...	0.0	[1..293]	[1..293]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHMQLRKRKR VDYSGRNQTS DPPSTTTAAV PSIIVPKKRK VVAQNMVSPA IRATTTTLGT  60
   61 SNIIIPKPLQ RPKFHNSASL SSPDDDPEKI SVLEVQKNLS NLIKRQQRLF YKDIHKPTLA 120
  121 GLKNFEMLRL PNDLKLLQNI VNLLYSFEQL NSDSKTRPVT TSKLKASSQA HSDKLKKMLA 180
  181 ERKPPFSHPS HSGTAYHNDI IHEIANLHSI NLVDLINLEV YNNNCHTNNT ALQTTANSLT 240
  241 LNSIIKKLDK PILKERNNSL VWPHKSRFKA KRNQPSPGQS LINNTDITLY NDV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits