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View Structure Prediction Details

Protein: EGD1
Organism: Saccharomyces cerevisiae
Length: 157 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EGD1.

Description E-value Query
Range
Subject
Range
BTF3_MOUSE - Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=1 SV=3
4.0E-68 [2..154] [47..197]
gi|208965864 - gi|208965864|dbj|BAG72946.1| basic transcription factor 3 [synthetic construct]
BTF3 - basic transcription factor 3
gi|55624114 - gi|55624114|ref|XP_517710.1| PREDICTED: basic transcription factor 3 isoform 3 [Pan troglodytes]
6.0E-68 [2..154] [49..199]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
7.0E-68 [2..154] [49..199]
gi|60652869, gi|... - gi|60652871|gb|AAX29130.1| basic transcription factor 3 [synthetic construct], gi|60652869|gb|AAX291...
3.0E-67 [2..154] [5..155]
gi|28189635 - gi|28189635|dbj|BAC56432.1| similar to basic transcription factor 3a (BTF3) [Bos taurus]
2.0E-65 [2..146] [6..150]
gi|24431603, gi|... - gi|50916214|ref|XP_468566.1| Putative transcription factor [Oryza sativa (japonica cultivar-group)],...
3.0E-54 [10..152] [445..591]
gi|5679035 - gi|5679035|gb|AAD46830.1|AF160890_1 BcDNA.GM05329 [Drosophila melanogaster]
3.0E-51 [3..156] [1..153]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIDQEKLAK LQKLSANNKV GGTRRKLNKK AGSSAGANKD DTKLQSQLAK LHAVTIDNVA  60
   61 EANFFKDDGK VMHFNKVGVQ VAAQHNTSVF YGLPQEKNLQ DLFPGIISQL GPEAIQALSQ 120
  121 LAAQMEKHEA KAPADAEKKD EAIPELVEGQ TFDADVE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.920819
Match: PF01849
Description: NAC domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle