YRC Public Data Repository - Protein Structure Prediction

Protein:	SRL4
Organism:	Saccharomyces cerevisiae
Length:	281 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRL4.

Description	E-value	Query Range	Subject Range
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	4.0E-81	[23..280]	[1..228]
gi\|25283158 - pir\|\|C83961 3-oxoacyl-(acyl-carrier protein) reductase fabG [imported] - Bacillus halodurans (strain... gi\|10175111, gi\|... - gi\|15615054\|ref\|NP_243357.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Bacillus halodurans C-125],...	1.0E-80	[25..280]	[2..228]
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	1.0E-77	[25..280]	[2..228]
gi\|27262214 - gi\|27262214\|gb\|AAN87388.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Heliobacillus mobilis]	1.0E-77	[16..281]	[4..239]
gi\|1502421 - gi\|1502421\|gb\|AAC44307.1\| 3-ketoacyl-acyl carrier protein reductase gi\|1502421\|gb\|AA... - 3-ketoacyl-acyl carrier protein reductase	2.0E-77	[25..279]	[2..227]
gi\|221313791 - gi\|221313791\|ref\|ZP_03595596.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221318715 - gi\|221318715\|ref\|ZP_03600009.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221322986 - gi\|221322986\|ref\|ZP_03604280.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis GN=fabG PE=3 SV=3 FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis (strain 168) GN=fabG PE=3 SV=3	3.0E-77	[25..279]	[2..227]
gi\|16800987 - gi\|16800987\|ref\|NP_471255.1\| hypothetical protein lin1921 [Listeria innocua Clip11262] gi\|25283285, gi\|... - pir\|\|AG1672 3-ketoacyl-acyl carrier protein reductase homolog fabG [imported] - Listeria innocua (st...	1.0E-76	[23..280]	[1..229]
gi\|16803847 - gi\|16803847\|ref\|NP_465332.1\| hypothetical protein lmo1807 [Listeria monocytogenes EGD-e] gi\|25283283, gi\|... - pir\|\|AG1300 3-ketoacyl-acyl carrier protein reductase homolog fabG [imported] - Listeria monocytogen... gi\|224501391 - gi\|224501391\|ref\|ZP_03669698.1\| hypothetical protein LmonFR_02530 [Listeria monocytogenes FSL R2-561... gi\|254831591, gi... - gi\|254831591\|ref\|ZP_05236246.1\| hypothetical protein Lmon1_09568 [Listeria monocytogenes 10403S], gi...	2.0E-76	[23..280]	[1..229]
gi\|90429999, gi\|... - gi\|90586379\|ref\|ZP_01242077.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Staphylococcus aureus sub... gi\|82750835, gi\|... - gi\|82750835\|ref\|YP_416576.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus RF122... gi\|90426550, gi\|... - gi\|90584394\|ref\|ZP_01240127.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Staphylococcus aureus sub... FABG_STAAC - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain COL) GN=fabG PE=3 S... gi\|227558554, gi... - gi\|227558554\|ref\|ZP_03988601.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|227900345, gi... - gi\|227900345\|ref\|ZP_04018150.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|251814140, gi... - gi\|251814140\|ref\|ZP_04828613.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|253728585, gi... - gi\|253733531\|ref\|ZP_04867696.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|161509402, gi... - gi\|161509402\|ref\|YP_001575061.1\| 3-oxoacyl-[acyl-carrier-protein] reductase [Staphylococcus aureus s... FABG_STAAN - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 ... FABG_STAAR - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE... FABG_STAAS - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE... gi\|156721687, gi... - gi\|156979552\|ref\|YP_001441811.1\| 3-oxoacyl-#acyl-carrier protein reductase [Staphylococcus aureus su... gi\|25283236, gi\|... - pir\|\|B89896 3-oxoacyl-(acyl-carrier protein) reductase [imported] - Staphylococcus aureus (strain N3... FABG_STAAW - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 S... FABG_STAAM - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)...	3.0E-75	[20..280]	[1..228]
FABG_AQUAE - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Aquifex aeolicus (strain VF5) GN=fabG PE=1 SV=1 FABG_AQUAE - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Aquifex aeolicus GN=fabG PE=1 SV=1	4.0E-75	[24..279]	[4..230]

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Predicted Domain #1

Region A:
Residues: [1-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTIYKVLV SFYQYVGLGK KFHPSHDTVL IIGGSSNELG IELCETFIED YHTKVINIDT  60
   61 IDSINGKNAR RSEKLYTFIS CKDFSDIKCL EESMLYLQNL EIIPTVLINN MQEGIESTLL 120
  121 KEDKFLRLDE ESLNEFEKIV RYNLQSVILI TKFCLSNIFP KVQAEAQEKA KGFYIVNISS 180
  181 VLTLKPCKSG THFITSKCGI NSFHDGITSE LKLKDSNLNV KTLIAYLPSF ESEAHWKRLS 240
  241 PSISKHLVHC LLEGRYGDTI LESKRSIGDI LLITGFKSSF T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.522879
Match:	1i01A_
Description:	beta-keto acyl carrier protein reductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits